YRC Public Data Repository - Protein Structure Prediction

Protein:	RL10_ECOLI
Organism:	Escherichia coli
Length:	165 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL10_ECOLI.

Description	E-value	Query Range	Subject Range
RL10_SODGM - 50S ribosomal protein L10 OS=Sodalis glossinidius (strain morsitans) GN=rplJ PE=3 SV=1	172.0	[0..1]	[165..1]
RL10_ACTSZ - 50S ribosomal protein L10 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplJ PE=3 SV=...	169.0	[0..1]	[165..1]
RL10_HISS2 - 50S ribosomal protein L10 OS=Histophilus somni (strain 2336) GN=rplJ PE=3 SV=1	169.0	[0..1]	[165..1]
RL10_ACTP7 - 50S ribosomal protein L10 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rplJ PE=3 S... gi\|46143568 - gi\|46143568\|ref\|ZP_00134927.2\| COG0244: Ribosomal protein L10 [Actinobacillus pleuropneumoniae serov... RL10_ACTP2 - 50S ribosomal protein L10 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rplJ PE=3 S...	169.0	[0..1]	[165..1]
RL10_MANSM - 50S ribosomal protein L10 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplJ PE=3 SV=1	169.0	[0..1]	[165..1]
RL10_HAEI8 - 50S ribosomal protein L10 OS=Haemophilus influenzae (strain 86-028NP) GN=rplJ PE=3 SV=1	168.0	[0..1]	[165..1]
gi\|145642230, gi... - gi\|145642230\|ref\|ZP_01797797.1\| 50S ribosomal protein L10 [Haemophilus influenzae R3021], gi\|1456316... gi\|145629686, gi... - gi\|145629686\|ref\|ZP_01785483.1\| 50S ribosomal protein L10 [Haemophilus influenzae 22.1-21], gi\|14497... gi\|229809657, gi... - gi\|229847419\|ref\|ZP_04467519.1\| 50S ribosomal protein L10 [Haemophilus influenzae 7P49H1], gi\|229809... gi\|229845630, gi... - gi\|229845630\|ref\|ZP_04465755.1\| 50S ribosomal protein L10 [Haemophilus influenzae 6P18H1], gi\|229811... gi\|42628926 - gi\|42628926\|ref\|ZP_00154478.1\| COG0244: Ribosomal protein L10 [Haemophilus influenzae R2846] gi\|42630902 - gi\|42630902\|ref\|ZP_00156440.1\| COG0244: Ribosomal protein L10 [Haemophilus influenzae R2866] RL10_HAEIE - 50S ribosomal protein L10 OS=Haemophilus influenzae (strain PittEE) GN=rplJ PE=3 SV=1 gi\|145642230, gi... - gi\|145642230\|ref\|ZP_01797797.1\| 50S ribosomal protein L10 [Haemophilus influenzae R3021], gi\|1449826... gi\|145639388, gi... - gi\|145639388\|ref\|ZP_01794993.1\| 50S ribosomal protein L10 [Haemophilus influenzae PittII], gi\|145271... gi\|145268800, gi... - gi\|145638006\|ref\|ZP_01793641.1\| 50S ribosomal protein L10 [Haemophilus influenzae PittHH], gi\|145268... gi\|145267060, gi... - gi\|145635665\|ref\|ZP_01791361.1\| 50S ribosomal protein L10 [Haemophilus influenzae PittAA], gi\|145267...	167.0	[0..1]	[165..1]
RL10_HAEDU - 50S ribosomal protein L10 OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=rplJ PE=3 SV=1 RL10_HAEDU - 50S ribosomal protein L10 OS=Haemophilus ducreyi GN=rplJ PE=3 SV=1	167.0	[0..1]	[165..1]
RL10_HAES1 - 50S ribosomal protein L10 OS=Haemophilus somnus (strain 129Pt) GN=rplJ PE=3 SV=1	167.0	[0..1]	[165..1]
gi\|229329198, gi... - gi\|229499919\|ref\|ZP_04393596.1\| ribosomal protein L10 [Geobacillus sp. Y412MC52], gi\|229329198\|gb\|EE... gi\|220706737, gi... - gi\|221089311\|ref\|ZP_03558831.1\| ribosomal protein L10 [Geobacillus sp. Y412MC61], gi\|220706737\|gb\|EE... RL10_GEOKA - 50S ribosomal protein L10 OS=Geobacillus kaustophilus (strain HTA426) GN=rplJ PE=3 SV=1 RL10_GEOKA - 50S ribosomal protein L10 OS=Geobacillus kaustophilus GN=rplJ PE=3 SV=1	167.0	[0..1]	[164..1]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNLQDKQA IVAEVSEVAK GALSAVVADS RGVTVDKMTE LRKAGREAGV YMRVVRNTLL  60
   61 RRAVEGTPFE CLKDAFVGPT LIAYSMEHPG AAARLFKEFA KANAKFEVKA AAFEGELIPA 120
  121 SQIDRLATLP TYEEAIARLM ATMKEASAGK LVRTLAAVRD AKEAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	1zavA
Description:	Ribosomal Protein L10-L12(NTD) Complex, Space Group P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.21399440705185	bayes_pls_golite062009
structural molecule activity	8.64272477066313	bayes_pls_golite062009
binding	0.883379158418688	bayes_pls_golite062009
protein binding	0.184314459922274	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: