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View Structure Prediction Details

Protein: PMA3_ARATH
Organism: Arabidopsis thaliana
Length: 949 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMA3_ARATH.

Description E-value Query
Range
Subject
Range
gi|6759597 - gi|6759597|emb|CAB69823.1| plasma membrane H+ ATPase [Prunus persica]
870.0 [0..2] [949..6]

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Predicted Domain #1
Region A:
Residues: [1-898]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGLEDIVN ENVDLEKIPI EEVFQQLKCS REGLSGAEGE NRLQIFGPNK LEEKKESKLL  60
   61 KFLGFMWNPL SWVMEAAAIM AIALANGGGK PPDWQDFVGI VCLLVINSTI SFVEENNAGN 120
  121 AAAALMAGLA PKTKVLRDGK WSEQEASILV PGDIVSIKLG DIIPADARLL EGDPLKVDQS 180
  181 ALTGESLPAT KGPGEEVFSG STCKQGEIEA VVIATGVHTF FGKAAHLVDS TNQVGHFQKV 240
  241 LTAIGNFCIC SIAVGIAIEI VVMYPIQRRH YRDGIDNLLV LLIGGIPIAM PTVLSVTMAI 300
  301 GSHKLSQQGA ITKRMTAIEE MAGMDVLCSD KTGTLTLNKL SVDKNLIEVY CKGVEKDEVL 360
  361 LFAARASRVE NQDAIDAAMV GMLADPKEAR AGIREIHFLP FNPVDKRTAL TFIDSNGNWH 420
  421 RVSKGAPEQI LDLCNARADL RKRVHSTIDK YAERGLRSLA VSRQTVPEKT KESSGSPWEF 480
  481 VGVLPLFDPP RHDSAETIRR ALDLGVNVKM ITGDQLAIAK ETGRRLGMGS NMYPSSSLLG 540
  541 KHKDEAMAHI PVEDLIEKAD GFAGVFPEHK YEIVKKLQER KHICGMTGDG VNDAPALKKA 600
  601 DIGIAVADAT DAARGASDIV LTEPGLSVII SAVLTSRAIF QRMKNYTIYA VSITIRIVFG 660
  661 FMLIALIWKF DFSPFMVLII AILNDGTIMT ISKDRVKPSP TPDSWKLKEI FATGVVLGGY 720
  721 MAIMTVVFFW AAYKTDFFPR TFHVRDLRGS EHEMMSALYL QVSIVSQALI FVTRSRSWSF 780
  781 TERPGYFLLI AFWVAQLIAT AIAVYGNWEF ARIKGIGWGW AGVIWLYSIV FYFPLDIMKF 840
  841 AIRYILAGTA WKNIIDNRTA FTTKQNYGIE EREAQWAHAQ RTLHGLQNTE TANVVPER

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 150.0
Match: 1mhsA
Description: Proton ATPase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [899-949]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGYRELSEIA NQAKRRAEIA RLRELHTLKG HVESVVKLKG LDIETAGHYT V

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.47
Match: 2o98P
Description: No description for 2o98P was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle