YRC Public Data Repository - Protein Structure Prediction

Protein:	DPS_ECOLI
Organism:	Escherichia coli
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|111617982, gi... - gi\|120609295\|ref\|YP_968973.1\| Ferritin, Dps family protein [Acidovorax avenae subsp. citrulli AAC00-...	156.0	[0..7]	[167..10]
gi\|171992222, gi... - gi\|172059705\|ref\|YP_001807357.1\| Ferritin Dps family protein [Burkholderia ambifaria MC40-6], gi\|171... gi\|115350672, gi... - gi\|74017104\|ref\|ZP_00687729.1\| Ferritin and Dps [Burkholderia ambifaria AMMD], gi\|72610575\|gb\|EAO465...	154.0	[0..9]	[166..2]
gi\|67531073, gi\|... - gi\|67547638\|ref\|ZP_00425539.1\| Ferritin and Dps [Burkholderia vietnamiensis G4], gi\|67531073\|gb\|EAM2...	154.0	[0..9]	[166..2]
gi\|84356826, gi\|... - gi\|84356826\|ref\|ZP_00981660.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta... gi\|105891993, gi... - gi\|67658225\|ref\|ZP_00455598.1\| Ferritin and Dps [Burkholderia cenocepacia AU 1054], gi\|67094066\|gb\|E... gi\|116646840, gi... - gi\|67665887\|ref\|ZP_00463144.1\| Ferritin and Dps [Burkholderia cenocepacia HI2424], gi\|67100567\|gb\|EA... gi\|170732049, gi... - gi\|170732049\|ref\|YP_001763996.1\| Ferritin Dps family protein [Burkholderia cenocepacia MC0-3], gi\|16...	152.0	[0..9]	[166..2]
gi\|124895800, gi... - gi\|84360853\|ref\|ZP_00985541.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta...	152.0	[0..9]	[166..2]
gi\|167825721 - gi\|167825721\|ref\|ZP_02457192.1\| DpsA [Burkholderia pseudomallei 9] gi\|167847206 - gi\|167847206\|ref\|ZP_02472714.1\| DpsA [Burkholderia pseudomallei B7210] gi\|226198407, gi... - gi\|226198407\|ref\|ZP_03793976.1\| ferritin-like domain protein [Burkholderia pseudomallei Pakistan 9],... gi\|167912439 - gi\|167912439\|ref\|ZP_02499530.1\| DpsA [Burkholderia pseudomallei 112] gi\|83677282, gi\|... - gi\|83677282\|ref\|ZP_00939036.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta... gi\|67680400, gi\|... - gi\|90290075\|ref\|ZP_01209756.1\| hypothetical protein Bpse17_02005232 [Burkholderia pseudomallei 1710a... gi\|194507277, gi... - gi\|67752475\|ref\|ZP_00491454.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta... gi\|76809702, gi\|... - gi\|76809702\|ref\|YP_334735.1\| DpsA [Burkholderia pseudomallei 1710b], gi\|76579155\|gb\|ABA48630.1\| DpsA...	152.0	[0..9]	[166..2]
gi\|83653461, gi\|... - gi\|83719636\|ref\|YP_441831.1\| DpsA [Burkholderia thailandensis E264], gi\|83653461\|gb\|ABC37524.1\| DpsA... gi\|167837795 - gi\|167837795\|ref\|ZP_02464678.1\| DpsA [Burkholderia thailandensis MSMB43] gi\|167618762 - gi\|167618762\|ref\|ZP_02387393.1\| DpsA [Burkholderia thailandensis Bt4] gi\|167580658 - gi\|167580658\|ref\|ZP_02373532.1\| DpsA [Burkholderia thailandensis TXDOH]	151.0	[0..9]	[166..2]
gi\|238523492, gi... - gi\|67642352\|ref\|ZP_00441110.1\| DpsA [Burkholderia mallei GB8 horse 4], gi\|238523492\|gb\|EEP86930.1\| D... gi\|126241261, gi... - gi\|67648683\|ref\|ZP_00446911.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta... gi\|83619745, gi\|... - gi\|83619745\|ref\|ZP_00930174.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta... gi\|194527888, gi... - gi\|83624550\|ref\|ZP_00934795.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta... gi\|84523860, gi\|... - gi\|84523860\|ref\|ZP_01010996.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta... gi\|67757964, gi\|... - gi\|67757964\|ref\|ZP_00496758.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta... gi\|194505378, gi... - gi\|99907480\|ref\|ZP_01315394.1\| hypothetical protein Bpse1_03005271 [Burkholderia pseudomallei 1655],... gi\|126219062, gi... - gi\|67734867\|ref\|ZP_00485934.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta... gi\|53726163, gi\|... - gi\|53726163\|ref\|YP_103949.1\| ferritin-like domain-containing protein [Burkholderia mallei ATCC 23344... gi\|167721129 - gi\|167721129\|ref\|ZP_02404365.1\| ferritin-like domain protein [Burkholderia pseudomallei DM98] gi\|22657798 - gi\|22657798\|gb\|AAN04250.1\| DpsA [Burkholderia pseudomallei] gi\|167740099 - gi\|167740099\|ref\|ZP_02412873.1\| ferritin-like domain protein [Burkholderia pseudomallei 14] gi\|167817310 - gi\|167817310\|ref\|ZP_02448990.1\| ferritin-like domain protein [Burkholderia pseudomallei 91] gi\|167895793 - gi\|167895793\|ref\|ZP_02483195.1\| ferritin-like domain protein [Burkholderia pseudomallei 7894] gi\|82528708, gi\|... - gi\|82528708\|ref\|ZP_00887973.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta... gi\|167904180 - gi\|167904180\|ref\|ZP_02491385.1\| ferritin-like domain protein [Burkholderia pseudomallei NCTC 13177] gi\|242138256, gi... - gi\|82538655\|ref\|ZP_00897648.1\| hypothetical protein Bpse110_02000350 [Burkholderia pseudomallei 1106... gi\|167920394 - gi\|167920394\|ref\|ZP_02507485.1\| ferritin-like domain protein [Burkholderia pseudomallei BCC215] gi\|217420388, gi... - gi\|217420388\|ref\|ZP_03451893.1\| ferritin-like domain protein [Burkholderia pseudomallei 576], gi\|217... gi\|237813718, gi... - gi\|237813718\|ref\|YP_002898169.1\| DpsA [Burkholderia pseudomallei MSHR346], gi\|237504731\|gb\|ACQ97049.... gi\|124293002, gi... - gi\|124384982\|ref\|YP_001027156.1\| ferritin-like domain-containing protein [Burkholderia mallei NCTC 1... gi\|52210885, gi\|... - gi\|53720471\|ref\|YP_109457.1\| ferritin DPS family DNA-binding protein [Burkholderia pseudomallei K962... gi\|243060385, gi... - gi\|243060385\|gb\|EES42571.1\| ferritin-like domain protein [Burkholderia mallei PRL-20], gi\|167004247\|... gi\|85065547 - gi\|85065547\|ref\|ZP_01026400.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta... gi\|134280379, gi... - gi\|134280379\|ref\|ZP_01767090.1\| ferritin-like domain protein [Burkholderia pseudomallei 305], gi\|134... gi\|148024830, gi... - gi\|87313806\|ref\|ZP_01094876.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta...	151.0	[0..9]	[166..2]
gi\|221729033, gi... - gi\|222109589\|ref\|YP_002551853.1\| Ferritin Dps family protein [Diaphorobacter sp. TPSY], gi\|221729033... gi\|120604890, gi... - gi\|121592810\|ref\|YP_984706.1\| Ferritin, Dps family protein [Acidovorax sp. JS42], gi\|120604890\|gb\|AB...	151.0	[0..3]	[167..5]
gi\|17133280, gi\|... - gi\|17231637\|ref\|NP_488185.1\| hypothetical protein all4145 [Nostoc sp. PCC 7120], gi\|17133280\|dbj\|BAB... gi\|25318468 - pir\|\|AB2324 hypothetical protein all4145 [imported] - Nostoc sp. (strain PCC 7120)	148.0	[0..9]	[167..2]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTAKLVKSK ATNLLYTRND VSDSEKKATV ELLNRQVIQF IDLSLITKQA HWNMRGANFI  60
   61 AVHEMLDGFR TALIDHLDTM AERAVQLGGV ALGTTQVINS KTPLKSYPLD IHNVQDHLKE 120
  121 LADRYAIVAN DVRKAIGEAK DDDTADILTA ASRDLDKFLW FIESNIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	1f30A
Description:	Dodecameric ferritin homolog
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.19368678835393	bayes_pls_golite062009
superoxide dismutase activity	1.09380928995205	bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor	1.09380928995205	bayes_pls_golite062009
iron ion binding	0.947885019777229	bayes_pls_golite062009
catalytic activity	0.197328811494233	bayes_pls_golite062009
protein binding	0.0527791762420279	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: