YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24053998, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24053998, gi|....

Description	E-value	Query Range	Subject Range
gi\|23015073 - gi\|23015073\|ref\|ZP_00054861.1\| COG1393: Arsenate reductase and related proteins, glutaredoxin family...	173.0	[0..2]	[140..7]
gi\|110336314, gi... - gi\|121593687\|ref\|YP_985583.1\| arsenate reductase [Acidovorax sp. JS42], gi\|120605767\|gb\|ABM41507.1\| ...	173.0	[0..1]	[140..1]
gi\|150958272, gi... - gi\|152973480\|ref\|YP_001338531.1\| arsenate reductase [Klebsiella pneumoniae subsp. pneumoniae MGH 785... ARSC_ACIMU - Arsenate reductase OS=Acidiphilium multivorum GN=arsC PE=3 SV=1 ARSC_ACIMA - Arsenate reductase OS=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 / AIU301) G...	173.0	[0..1]	[141..1]
gi\|218367341, gi... - gi\|218560572\|ref\|YP_002393485.1\| arsenate reductase [Escherichia coli S88], gi\|218367341\|emb\|CAR0511... gi\|218429346, gi... - gi\|218691782\|ref\|YP_002399994.1\| arsenate reductase [Escherichia coli ED1a], gi\|218429346\|emb\|CAR103... gi\|26110552, gi\|... - gi\|26250123\|ref\|NP_756163.1\| arsenate reductase [Escherichia coli CFT073], gi\|26110552\|gb\|AAN82737.1... gi\|115514903, gi... - gi\|117625779\|ref\|YP_859102.1\| arsenate reductase [Escherichia coli APEC O1], gi\|115514903\|gb\|ABJ0297... gi\|227839530, gi... - gi\|227883651\|ref\|ZP_04001456.1\| arsenate reductase [Escherichia coli 83972], gi\|227839530\|gb\|EEJ4999... gi\|237703255, gi... - gi\|237703255\|ref\|ZP_04533736.1\| arsenate reductase ArsC [Escherichia sp. 3_2_53FAA], gi\|226902519\|gb... gi\|91074569, gi\|... - gi\|91212995\|ref\|YP_542981.1\| arsenate reductase [Escherichia coli UTI89], gi\|91074569\|gb\|ABE09450.1\|...	172.0	[0..1]	[141..1]
gi\|69933848, gi\|... - gi\|69933848\|ref\|ZP_00628984.1\| Arsenate reductase [Paracoccus denitrificans PD1222], gi\|69154195\|gb\|...	172.0	[0..3]	[141..178]
gi\|67088759, gi\|... - gi\|67154626\|ref\|ZP_00416371.1\| Arsenate reductase [Azotobacter vinelandii AvOP], gi\|67088759\|gb\|EAM0... gi\|67154626, gi\|... - gi\|67154626\|ref\|ZP_00416371.1\| Arsenate reductase [Azotobacter vinelandii AvOP], ref\|ZP_00089034.1\| ...	172.0	[0..1]	[140..1]
gi\|68537489, gi\|... - gi\|98977961\|gb\|ABF54112.1\| arsenate reductase [Sphingopyxis alaskensis RB2256], gi\|68537489\|ref\|ZP_0...	171.0	[0..1]	[140..1]
gi\|194431043, gi... - gi\|83571552\|ref\|ZP_00922992.1\| COG1393: Arsenate reductase and related proteins, glutaredoxin family...	171.0	[0..1]	[141..1]
gi\|107102033 - gi\|107102033\|ref\|ZP_01365951.1\| hypothetical protein PaerPA_01003081 [Pseudomonas aeruginosa PACS2] gi\|133739061, gi... - gi\|134095158\|ref\|YP_001100233.1\| arsenate reductase (glutaredoxin) [Herminiimonas arsenicoxydans], g...	170.0	[0..1]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNITIYHNP ACGTSRNTLE MIRNSGTEPT IIHYLETPPT RDELVKLIAD MGISVRALLR  60
   61 KNVEPYEELG LAEDKFTDDR LIDFMLQHPI LINRPIVVTP LGTRLCRPSE VVLEILPDAQ 120
  121 KGAFSKEDGE KVVDEAGKRL K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.39794
Match:	1i9dA
Description:	Arsenate reductase ArsC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
antioxidant activity	0.92550006805966	bayes_pls_golite062009
peroxidase activity	0.62384958394125	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	0.62384958394125	bayes_pls_golite062009
catalytic activity	0.276204095462236	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: