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View Structure Prediction Details

Protein: DOF22_ARATH
Organism: Arabidopsis thaliana
Length: 340 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DOF22_ARATH.

Description E-value Query
Range
Subject
Range
gi|25352305, gi|... - gi|3927829|gb|AAC79586.1| putative DOF zinc finger protein [Arabidopsis thaliana], pir||B84689 proba...
223.0 [0..1] [340..1]
gi|92899183 - gi|92899183|gb|ABE94576.1| Zinc finger, Dof-type [Medicago truncatula]
165.0 [0..1] [331..1]

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Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFSSVSSFL DPPINWPQSA NPNNHPHHHQ LQENGSLVSG HHQVLSHHFP QNPNPNHHHV  60
   61 ETAAATTVDP SSLNGQAAER ARLAKNSQPP EGALKCPRCD SANTKFCYFN NYNLTQPRHF 120
  121 CKACRRYWTR GGALRNVPVG GGCRRNKKGK SGNSKSSSSS QNKQSTSMVN ATSPTNTSNV 180
  181 QLQTNSQFPF LPTLQNLTQL GGIGLNLAAI NGNNGGNGNT SSSFLNDLGF 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.19
Match: 2cklB
Description: No description for 2cklB was found.

Predicted Domain #2
Region A:
Residues: [231-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FHGGNTSGPV MGNNNENNLM TSLGSSSHFA LFDRTMGLYN FPNEVNMGLS SIGATRVSQT  60
   61 AQVKMEDNHL GNISRPVSGL TSPGNQSNQY WTGQGLPGSS SNDHHHQHLM 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle