YRC Public Data Repository - Protein Structure Prediction

Protein:	VPG2_HAEIN
Organism:	Haemophilus influenzae Rd KW20
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPG2_HAEIN.

Description	E-value	Query Range	Subject Range
gi\|33147940, gi\|... - gi\|33151719\|ref\|NP_873072.1\| mu-like bacteriophage G protein 2 [Haemophilus ducreyi 35000HP], gi\|331...	157.0	[0..1]	[138..1]
gi\|11282881 - pir\|\|F81900 hypothetical protein NMA1316 [imported] - Neisseria meningitidis (strain Z2491 serogroup... gi\|7379992, gi\|1... - gi\|7379992\|emb\|CAB84568.1\| hypothetical protein NMA1316 [Neisseria meningitidis Z2491], gi\|15794245\|...	146.0	[0..1]	[137..1]
gi\|16502707, gi\|... - gi\|25512946\|pir\|\|AG0686 probable bacteriophage protein STY1618 [imported] - Salmonella enterica subs... gi\|16760412 - gi\|16760412\|ref\|NP_456029.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ser...	140.0	[0..1]	[138..6]
gi\|168826957, gi... - gi\|32029862\|ref\|ZP_00132816.1\| COG5005: Mu-like prophage protein gpG [Haemophilus somnus 2336], gi\|1...	140.0	[0..1]	[138..1]
gi\|85058816, gi\|... - gi\|85058816\|ref\|YP_454518.1\| hypothetical protein SG0838 [Sodalis glossinidius str. 'morsitans'], gi...	139.0	[0..1]	[138..6]
gi\|213855899 - gi\|213855899\|ref\|ZP_03384139.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213610157 - gi\|213610157\|ref\|ZP_03369983.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213648562 - gi\|213648562\|ref\|ZP_03378615.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213427422 - gi\|213427422\|ref\|ZP_03360172.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213581732 - gi\|213581732\|ref\|ZP_03363558.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|213024650 - gi\|213024650\|ref\|ZP_03339097.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ... gi\|29137452, gi\|... - gi\|29141824\|ref\|NP_805166.1\| putative bacteriophage protein [Salmonella enterica subsp. enterica ser...	139.0	[0..1]	[138..6]
gi\|75255744, gi\|... - gi\|75255744\|ref\|ZP_00727505.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli E22], gi\|1930... gi\|218370285, gi... - gi\|218700299\|ref\|YP_002407928.1\| Putative phage virion morphogenesis (putative tail completion) prot... gi\|75228565, gi\|... - gi\|75228565\|ref\|ZP_00715199.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli B7A], gi\|1911...	139.0	[0..1]	[138..6]
gi\|75512140, gi\|... - gi\|75512140\|ref\|ZP_00734712.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli 53638], gi\|18...	138.0	[0..1]	[138..6]
gi\|114778721, gi... - gi\|114778721\|ref\|ZP_01453531.1\| possible bacteriophage Mu G-like protein [Mariprofundus ferrooxydans...	135.0	[0..1]	[137..7]
gi\|50122643, gi\|... - gi\|50122643\|ref\|YP_051810.1\| putative phage-related protein [Pectobacterium atrosepticum SCRI1043], ...	132.0	[0..2]	[138..4]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEIEINNAQ EITSALERLA QATAHRAPLM RSIAGTMESA VAQNFEVGGR PAWKKLKIRQ  60
   61 GTPLVDTENL MASITSEYNN NEAIVGTNEP YAAIHQFGGK AGRGRKVAIP ARPFLILTPQ 120
  121 DEADILEDIQ DYFQLLIK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	63.721246
Match:	PF05069.4
Description:	No description for PF05069.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.242	N/A	N/A	d.110.2	GAF domain-like
View	Download	0.242	N/A	N/A	d.122.1	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
View	Download	0.218	N/A	N/A	f.14.1	Voltage-gated potassium channels
View	Download	0.218	N/A	N/A	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.204	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore

Predicted functions:

Term	Confidence	Notes
binding	0.914900174786614	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: