YRC Public Data Repository - Protein Structure Prediction

Protein:	QCR6_SOLTU
Organism:	Solanum tuberosum
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for QCR6_SOLTU.

Description	E-value	Query Range	Subject Range
gi\|114556340 - gi\|114556340\|ref\|XP_001160694.1\| PREDICTED: similar to Ubiquinol-cytochrome c reductase hinge protei...	100.0	[0..8]	[69..114]
gi\|108872956, gi... - gi\|157127313\|ref\|XP_001654918.1\| hypothetical protein AaeL_AAEL010801 [Aedes aegypti], gi\|108872956\|...	99.0	[0..3]	[69..39]
gi\|21554004 - gi\|21554004\|gb\|AAM63085.1\| putative ubiquinol--cytochrome-c reductase [Arabidopsis thaliana]	97.0	[0..1]	[69..1]
gi\|62732974, gi\|... - gi\|77548864\|gb\|ABA91661.1\| ubiquinol--cytochrome-c reductase, putative [Oryza sativa (japonica culti...	94.0	[0..2]	[69..29]
gi\|157873472 - gi\|157873472\|ref\|XP_001685245.1\| ubiquinol-cytochrome-c reductase-like protein [Leishmania major] gi\|68128316 - gi\|68128316\|emb\|CAJ08461.1\| ubiquinol-cytochrome-c reductase-like protein [Leishmania major]	90.0	[0..5]	[69..75]
AGAP002245-PA - Cytochrome b-c1 complex subunit 6, mitochondrial\|protein_coding\|2R:18083401:18083756:-1\|gene:AGAP002... gi\|116132786, gi... - gi\|119112893\|ref\|XP_307940.3\| ENSANGP00000021887 [Anopheles gambiae str. PEST], gi\|116132786\|gb\|EAA0...	89.0	[0..3]	[69..19]
gi\|1087023, gi\|2... - gi\|285747\|dbj\|BAA03707.1\| filarial common antigen [Dirofilaria immitis], gi\|1087023\|gb\|AAB35316.1\| f...	89.0	[0..3]	[69..17]
gi\|109102268 - gi\|109102268\|ref\|XP_001085565.1\| PREDICTED: ubiquinol-cytochrome c reductase hinge protein [Macaca m...	89.0	[0..8]	[69..32]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEEVVDPK ATLEVSCKPK CVRQLKEYQA CTKRVEGDES GHKHCTGQYF DYWHCIDKCV  60
   61 AAKLFDHLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.30103
Match:	1bccH
Description:	Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits