YRC Public Data Repository - Protein Structure Prediction

Protein:	QCR8_BOVIN
Organism:	Bos taurus
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for QCR8_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|50755204 - gi\|50755204\|ref\|XP_414651.1\| PREDICTED: similar to GekBS039P isoform 2 [Gallus gallus]	148.0	[0..1]	[82..36]
gi\|73971160 - gi\|73971160\|ref\|XP_852164.1\| PREDICTED: similar to low molecular mass ubiquinone-binding protein [Ca...	144.0	[0..1]	[82..1]
QCR8_AILME - Cytochrome b-c1 complex subunit 8 OS=Ailuropoda melanoleuca GN=UQCRQ PE=3 SV=3	144.0	[0..1]	[82..1]
gi\|51814327 - gi\|51814327\|gb\|AAU09480.1\| GekBS039P [Gekko japonicus]	140.0	[0..1]	[82..1]
UQCRQ - ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa gi\|114601624, gi... - gi\|114601626\|ref\|XP_527009.2\| PREDICTED: ubiquinol-cytochrome c reductase, complex III subunit VII i...	140.0	[0..1]	[82..1]
QCR8_MOUSE - Cytochrome b-c1 complex subunit 8 OS=Mus musculus GN=Uqcrq PE=1 SV=3	140.0	[0..1]	[82..1]
UCRQ_BOVIN - (P13271) Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C (EC 1.10.2.2) (Ubi...	139.0	[0..2]	[82..1]
QCR8_RAT - Cytochrome b-c1 complex subunit 8 OS=Rattus norvegicus GN=Uqcrq PE=3 SV=1	138.0	[0..1]	[82..1]
UCRQ_PONPY - Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C - Pongo pygmaeus (Orangutan... QCR8_PONAB - Cytochrome b-c1 complex subunit 8 OS=Pongo abelii GN=UQCRQ PE=3 SV=3	138.0	[0..1]	[82..1]
gi\|114153194 - gi\|114153194\|gb\|ABI52763.1\| ubiquinol cytochrome c reductase subunit QCR8 [Argas monolakensis]	137.0	[0..1]	[82..1]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRQFGHLTR VRHVITYSLS PFEQRAFPHY FSKGIPNVLR RTRACILRVA PPFVAFYLVY  60
   61 TWGTQEFEKS KRKNPAAYEN DR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1be3G
Description:	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits