YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42631147
Organism:	Haemophilus influenzae R2866
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42631147.

Description	E-value	Query Range	Subject Range
gi\|78043299, gi\|... - gi\|78043299\|ref\|YP_359928.1\| hypothetical protein CHY_1082 [Carboxydothermus hydrogenoformans Z-2901...	125.0	[0..4]	[99..7]
gi\|67849255, gi\|... - gi\|67916798\|ref\|ZP_00510492.1\| Trp repressor [Clostridium thermocellum ATCC 27405], gi\|67849255\|gb\|E...	122.0	[0..1]	[98..1]
YERC_BACSU - Uncharacterized protein yerC OS=Bacillus subtilis GN=yerC PE=4 SV=1 YERC_BACSU - Uncharacterized protein YerC OS=Bacillus subtilis (strain 168) GN=yerC PE=4 SV=1 gi\|221322020 - gi\|221322020\|ref\|ZP_03603314.1\| hypothetical protein BsubsS_03714 [Bacillus subtilis subsp. subtilis... gi\|221317741 - gi\|221317741\|ref\|ZP_03599035.1\| hypothetical protein BsubsJ_03628 [Bacillus subtilis subsp. subtilis... gi\|221312817 - gi\|221312817\|ref\|ZP_03594622.1\| hypothetical protein BsubsN3_03674 [Bacillus subtilis subsp. subtili...	122.0	[0..3]	[101..4]
gi\|56418808, gi\|... - gi\|56418808\|ref\|YP_146126.1\| hypothetical protein GK0273 [Geobacillus kaustophilus HTA426], gi\|56378...	122.0	[0..3]	[94..4]
gi\|51857671, gi\|... - gi\|51893982\|ref\|YP_076673.1\| hypothetical protein STH2844 [Symbiobacterium thermophilum IAM 14863], ...	122.0	[0..2]	[100..11]
gi\|83590868, gi\|... - gi\|83590868\|ref\|YP_430877.1\| Trp repressor [Moorella thermoacetica ATCC 39073], gi\|83573782\|gb\|ABC20...	121.0	[0..2]	[94..3]
gi\|89088468, gi\|... - gi\|89097088\|ref\|ZP_01169979.1\| hypothetical protein B14911_19325 [Bacillus sp. NRRL B-14911], gi\|890...	121.0	[0..3]	[100..4]
gi\|25341354 - pir\|\|G83729 hypothetical protein BH0639 [imported] - Bacillus halodurans (strain C-125) gi\|10173253, gi\|... - gi\|15613202\|ref\|NP_241505.1\| hypothetical protein BH0639 [Bacillus halodurans C-125], gi\|10173253\|db...	120.0	[0..3]	[100..4]
gi\|52079146, gi\|... - gi\|52784513\|ref\|YP_090342.1\| YerC [Bacillus licheniformis ATCC 14580], gi\|52347015\|gb\|AAU39649.1\| Ye...	120.0	[0..3]	[101..4]
gi\|98662540 - gi\|98662540\|dbj\|GAA00569.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	120.0	[0..2]	[94..5]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYISRNLEQW NAFLQMLKIA FEENKAQEFL TLLLTADERD AVGLRLQIVS QLIDKNMPQR  60
   61 EIQQNLNTSA ATITRGSNMI KTMDPDFMQW MKQHLDLIEK N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1rcsA
Description:	Trp repressor, TrpR
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits