YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11256790
Organism:	Neisseria meningitidis
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11256790.

Description	E-value	Query Range	Subject Range
gi\|59802375, gi\|... - gi\|59802375\|ref\|YP_209087.1\| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae FA 10...	198.0	[0..1]	[242..1]
UBIG_NEIMA - 3-demethylubiquinone-9 3-methyltransferase OS=Neisseria meningitidis serogroup A GN=ubiG PE=3 SV=1 gi\|11256788 - gi\|11256788\|pir\|\|E81957 3-demethylubiquinone-9 3-O-methyltransferase (EC 2.1.1.64) NMA0410 [imported... UBIG_NEIMA - Ubiquinone biosynthesis O-methyltransferase OS=Neisseria meningitidis serogroup A / serotype 4A (str...	193.0	[0..5]	[242..1]
gi\|254673723 - gi\|254673723\|emb\|CBA09364.1\| 3-demethylubiquinone-9 3-methyltransferase [Neisseria meningitidis sero... UBIG_NEIMB - 3-demethylubiquinone-9 3-methyltransferase OS=Neisseria meningitidis serogroup B GN=ubiG PE=3 SV=2 UBIG_NEIMB - Ubiquinone biosynthesis O-methyltransferase OS=Neisseria meningitidis serogroup B (strain MC58) GN=u...	193.0	[0..5]	[242..1]
gi\|89081582, gi\|... - gi\|89094107\|ref\|ZP_01167050.1\| 3-demethylubiquinone-9 3-methyltransferase [Oceanospirillum sp. MED92...	186.0	[0..1]	[240..1]
UBIG_ACIAC - Ubiquinone biosynthesis O-methyltransferase OS=Acidovorax citrulli (strain AAC00-1) GN=ubiG PE=3 SV=...	186.0	[0..5]	[241..1]
gi\|221730042, gi... - gi\|222110598\|ref\|YP_002552862.1\| ubiquinone biosynthesis O-methyltransferase [Diaphorobacter sp. TPS... gi\|120606883, gi... - gi\|121594803\|ref\|YP_986699.1\| 3-demethylubiquinone-9 3-methyltransferase [Acidovorax sp. JS42], gi\|1...	185.0	[0..11]	[240..6]
gi\|88800756, gi\|... - gi\|88800756\|ref\|ZP_01116314.1\| 3-demethylubiquinone-9 3-methyltransferase [Reinekea sp. MED297], gi\|...	183.0	[0..9]	[241..3]
gi\|94499386, gi\|... - gi\|94499386\|ref\|ZP_01305923.1\| 3-demethylubiquinone-9 3-methyltransferase [Oceanobacter sp. RED65], ...	181.0	[0..11]	[241..3]
UBIG_COXBN - Ubiquinone biosynthesis O-methyltransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ubiG P... gi\|94491372, gi\|... - gi\|94491372\|ref\|ZP_01298585.1\| hypothetical protein CburD_01001500 [Coxiella burnetii Dugway 7E9-12]...	180.0	[0..5]	[236..1]
gi\|49082032 - gi\|49082032\|gb\|AAT50416.1\| PA3171 [synthetic construct]	180.0	[0..10]	[240..2]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGKMSDKKY NVDEGEIAKF SRIADKWWDK SGEFKTLHDI NPLRLDYIDG HADLCGKRVL  60
   61 DVGCGGGILA ESMARRGAAF VKGIDMAEQS LETARLHAAL NNVADIEYEC IRVEDLAEAE 120
  121 PHSFDVVTCM EMMEHVPDPA AIVRACANLV KPDGMVFFST INKNPKSYLH LIVAAEYLLK 180
  181 FVPKGTHDWK KFIAPAELAR MCRQAGLDVA DTKGMTYHVL SQTYALCDST DVNYMFACRP 240
  241 AF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1kp9A
Description:	CmaA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	1.07321114919891	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.612108481676679	bayes_pls_golite062009
methyltransferase activity	0.606225212585352	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.14147363365106	bayes_pls_golite062009
binding	0.109975487409217	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: