YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2144754
Organism:	Sus scrofa domesticus
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2144754.

Description	E-value	Query Range	Subject Range
gi\|110055, gi\|54874 - gi\|54874\|emb\|CAA34914.1\| unknown protein [Mus musculus], pir\|\|S14529 transition protein 2 - mouse	149.0	[0..1]	[136..403]
gi\|109127617 - gi\|109127617\|ref\|XP_001106917.1\| PREDICTED: similar to Nuclear transition protein 2 (TP-2) (TP2) [Ma...	147.0	[0..1]	[137..52]
STP2_PONPY - Nuclear transition protein 2 (Fragment) OS=Pongo pygmaeus GN=TNP2 PE=2 SV=1	132.0	[0..1]	[132..1]
STP2_MACFA - Nuclear transition protein 2 OS=Macaca fascicularis GN=TNP2 PE=2 SV=2	129.0	[0..1]	[137..1]
gi\|193073246, gi... - gi\|193073246\|tpg\|DAA06279.1\| TPA_inf: transition protein 2 [Pan troglodytes], gi\|114660997\|ref\|XP_00...	124.0	[0..1]	[137..1]
STP2_BOVIN - Nuclear transition protein 2 OS=Bos taurus GN=TNP2 PE=2 SV=2	118.0	[0..1]	[137..1]
STP2_CANLF - Nuclear transition protein 2 OS=Canis lupus familiaris GN=TNP2 PE=2 SV=1	111.0	[0..1]	[135..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTKTQSLPN AHTQPHSNSG PQSHACNQCS CSHHCQNCSQ SCDRSQSCSR SRSSSQSPTG  60
   61 HRSLPGHQSQ SLSPSPSPRH RKRAMHSHRC PSRPGTRSCS HSKKRKNVEG KANKRKGIKR 120
  121 SQQVYKTKRR SSGRKYN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	98.721246
Match:	PF01254.9
Description:	No description for PF01254.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits