YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16121857, gi\|...
Organism:	Yersinia pestis CO92
Length:	402 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16121857, gi|....

Description	E-value	Query Range	Subject Range
gi\|89102151 - gi\|89102151\|ref\|ZP_01174808.1\| COG3328: Transposase and inactivated derivatives [Yersinia pestis bio...	343.0	[0..1]	[402..7]
gi\|31790976, gi\|... - gi\|31790976\|ref\|NP_857611.1\| hypothetical protein pEJ30_p02 [Erwinia sp. Ejp 556], gi\|31580582\|gb\|AA...	343.0	[0..1]	[402..1]
gi\|49658889 - gi\|49658889\|emb\|CAF28515.1\| is285 transposase [Yersinia pseudotuberculosis]	343.0	[0..1]	[402..1]
gi\|45437365, gi\|... - gi\|45442500\|ref\|NP_994039.1\| transposase for the IS285 insertion element [Yersinia pestis biovar Mic...	342.0	[0..1]	[402..1]
gi\|108812063, gi... - gi\|108812063\|ref\|YP_647830.1\| transposase [Yersinia pestis Nepal516], gi\|108775711\|gb\|ABG18230.1\| tr...	341.0	[0..1]	[402..1]
gi\|108782150, gi... - gi\|108793603\|ref\|YP_636759.1\| transposase [Yersinia pestis Antiqua], gi\|108782150\|gb\|ABG16207.1\| tra... gi\|167402259, gi... - gi\|167402259\|ref\|ZP_02307730.1\| IS285, transposase [Yersinia pestis biovar Antiqua str. UG05-0454], ...	341.0	[0..1]	[402..1]
gi\|108810404, gi... - gi\|229900582\|ref\|ZP_04515707.1\| putative transposase [Yersinia pestis Nepal516], gi\|229682363\|gb\|EEO... gi\|108809522, gi... - gi\|108809522\|ref\|YP_653438.1\| putative transposase [Yersinia pestis Antiqua], gi\|108781435\|gb\|ABG154... gi\|22127688, gi\|... - gi\|22127688\|ref\|NP_671111.1\| transposase [Yersinia pestis KIM], gi\|21960805\|gb\|AAM87362.1\|AE013984_8... gi\|167053957, gi... - gi\|167427030\|ref\|ZP_02318783.1\| IS285, transposase [Yersinia pestis biovar Mediaevalis str. K1973002... gi\|167402110, gi... - gi\|167402110\|ref\|ZP_02307587.1\| IS285, transposase [Yersinia pestis biovar Antiqua str. UG05-0454], ... gi\|166205078, gi... - gi\|166213676\|ref\|ZP_02239711.1\| IS285, transposase [Yersinia pestis biovar Antiqua str. B42003004], ...	341.0	[0..1]	[402..1]
gi\|162354146, gi... - gi\|77635592\|ref\|ZP_00797675.1\| COG3328: Transposase and inactivated derivatives [Yersinia pestis Ang...	339.0	[0..1]	[402..1]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEKKLKALA AELAKGLKTE ADLNAFSRML TKLTVETALN AELTEHLGHE KNTPKSGSNT  60
   61 RNGYSSKTLL CDDGEIELNT PRDRENTFEP QLIK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.745	N/A	N/A	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View	Download	0.701	N/A	N/A	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View	Download	0.662	N/A	N/A	a.22.1	Histone-fold
View	Download	0.655	N/A	N/A	a.22.1	Histone-fold
View	Download	0.652	N/A	N/A	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View	Download	0.621	N/A	N/A	d.298.1	Description not found.

Predicted Domain #2

Region A:
Residues: [95-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNQTRITQMD SQILSLYAKG MTTREIVATF KEMYDADVSP TLISKVTDAV KEQVAEWQNR  60
   61 QLDALYPIVY MDCIVVKVRQ NGSVINKAVF LALGINTEGQ KELLGMWLAE NEGAKFWLSV 120
  121 LTELKNRG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.781	N/A	N/A	d.233.1	Inhibitor of vertebrate lysozyme, Ivy
View	Download	0.717	N/A	N/A	a.152.1	Antioxidant defence protein AhpD
View	Download	0.659	N/A	N/A	d.81.1	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
View	Download	0.652	N/A	N/A	a.79.1	Antitermination factor NusB

Predicted Domain #3

Region A:
Residues: [223-402]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQDILIACVD GLKGFPDAIN SVYPQTHIQL CIIHMVRNSL KYVSWKDYKA VTSGLKMVYQ  60
   61 APTEEAALMA LDKFAEAWDD KYPQISKSWR THWENLNTFF GYPPDIRKAI YTTNAIESVN 120
  121 SVIRAAIKKR KVFPTDDSVR KVVYLAIKDA SKKWSMPIQN WRLAMSRFII EFGDRLSDHL 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits