YRC Public Data Repository - Protein Structure Prediction

Protein:	PGK_ECOLI
Organism:	Escherichia coli
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PGK_ECOLI.

Description	E-value	Query Range	Subject Range
PGK_SYMTH - Phosphoglycerate kinase OS=Symbiobacterium thermophilum GN=pgk PE=3 SV=1 PGK_SYMTH - Phosphoglycerate kinase OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=pgk PE=3 SV=1	568.0	[0..1]	[381..1]
gi\|67874129, gi\|... - gi\|67874129\|ref\|ZP_00504034.1\| Phosphoglycerate kinase [Clostridium thermocellum ATCC 27405], gi\|678... gi\|196251421, gi... - gi\|196251421\|ref\|ZP_03150091.1\| Phosphoglycerate kinase [Clostridium thermocellum DSM 4150], gi\|1961...	555.0	[0..1]	[384..4]
gi\|145410533, gi... - gi\|82500301\|ref\|ZP_00885721.1\| Triosephosphate isomerase [Caldicellulosiruptor saccharolyticus DSM 8...	554.0	[0..1]	[384..4]
gi\|134053522, gi... - gi\|88946881\|ref\|ZP_01149945.1\| Phosphoglycerate kinase [Desulfotomaculum reducens MI-1], gi\|88923626...	554.0	[0..1]	[384..1]
PGK_CARHZ - Phosphoglycerate kinase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-290...	553.0	[0..1]	[384..1]
gi\|51241761 - gi\|51241761\|dbj\|BAD36768.1\| phosphoglycerate kinase, chloroplast precursor [Cyanidioschyzon merolae]	552.0	[0..1]	[382..78]
PGK_ALCBS - Phosphoglycerate kinase OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / S...	551.0	[0..1]	[386..1]
PGK_MOOTA - Phosphoglycerate kinase OS=Moorella thermoacetica (strain ATCC 39073) GN=pgk PE=3 SV=1	551.0	[0..1]	[384..1]
PGKT_THEMA - Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4 PGKT_THEMA - Bifunctional PGK/TIM OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=pgk...	551.0	[0..1]	[386..1]
PGK_METCA - Phosphoglycerate kinase OS=Methylococcus capsulatus GN=pgk PE=3 SV=1 PGK_METCA - Phosphoglycerate kinase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=pgk ...	551.0	[0..1]	[385..1]

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Predicted Domain #1

Region A:
Residues: [1-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIKMTDLD LAGKRVFIRA DLNVPVKDGK VTSDARIRAS LPTIELALKQ GAKVMVTSHL  60
   61 GRPTEGEYNE EFSLLPVVNY LKDKLSNPVR LVKDYLDGVD VAEGELVVLE NVRFNKGEKK 120
  121 DDETLSKKYA ALCDVFVMDA FGTAHRAQAS THGIGKFADV ACAGPLLAAE LDALGKALKE 180
  181 PARPMVAIVG GSKVSTKLTV LDSLSKIADQ LIVGGGIANT FIAAQGHDVG KSLYEADLVD 240
  241 EAKRLLTTCN IPVPSDVRVA TEFSETAPAT LKSVNDVKAD EQILDIGDAS AQELAEILKN 300
  301 AKTILWNGPV GVFEFPNFRK GTEIVANAIA DSEAFSIAGG GDTLAAIDLF GIADKISYIS 360
  361 TGGGAFLEFV EGKVLPAVAM LEERAKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	157.0
Match:	1zmrA
Description:	No description for 1zmrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits