YRC Public Data Repository - Protein Structure Prediction

Protein:	RS11_HALMA
Organism:	Haloarcula marismortui
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS11_HALMA.

Description	E-value	Query Range	Subject Range
RS11_HALSA - 30S ribosomal protein S11P OS=Halobacterium salinarium GN=rps11p PE=3 SV=2 RS11_HALSA - 30S ribosomal protein S11 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rps... gi\|169235944, gi... - gi\|169235944\|ref\|YP_001689144.1\| ribosomal protein S11 [Halobacterium salinarum R1], gi\|167727010\|em...	184.0	[0..8]	[129..6]
gi\|88915995, gi\|... - gi\|88937250\|ref\|ZP_01142827.1\| ribosomal protein S11 [Geobacter uraniumreducens Rf4], gi\|88915995\|gb...	175.0	[0..6]	[126..17]
RS11_GEOMG - 30S ribosomal protein S11 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rps...	174.0	[0..6]	[126..17]
gi\|222056681, gi... - gi\|222056681\|ref\|YP_002539043.1\| ribosomal protein S11 [Geobacter sp. FRC-32], gi\|221565970\|gb\|ACM21...	174.0	[0..6]	[126..17]
RS11_GEOSL - 30S ribosomal protein S11 OS=Geobacter sulfurreducens GN=rpsK PE=3 SV=1 RS11_GEOSL - 30S ribosomal protein S11 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=rpsK ...	171.0	[0..6]	[126..17]
gi\|226203 - gi\|226203\|prf\|\|1501255B ribosomal protein S19	171.0	[0..2]	[129..1]
RS11_BARQU - 30S ribosomal protein S11 OS=Bartonella quintana (strain Toulouse) GN=rpsK PE=3 SV=1 RS11_BARQU - 30S ribosomal protein S11 OS=Bartonella quintana GN=rpsK PE=3 SV=1	171.0	[0..2]	[126..11]
RS11_BARHE - 30S ribosomal protein S11 OS=Bartonella henselae GN=rpsK PE=3 SV=1 RS11_BARHE - 30S ribosomal protein S11 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rpsK...	170.0	[0..2]	[126..11]
RS11_MAGSA - 30S ribosomal protein S11 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpsK PE=3 S...	170.0	[0..6]	[126..17]
RS11_SINMW - 30S ribosomal protein S11 OS=Sinorhizobium medicae (strain WSM419) GN=rpsK PE=3 SV=1 RS11_RHISN - 30S ribosomal protein S11 OS=Rhizobium sp. (strain NGR234) GN=rpsK PE=3 SV=1 RS11_RHIME - 30S ribosomal protein S11 OS=Rhizobium meliloti GN=rpsK PE=3 SV=1 RS11_RHIME - 30S ribosomal protein S11 OS=Rhizobium meliloti (strain 1021) GN=rpsK PE=3 SV=1	169.0	[0..2]	[126..11]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEETEDIWG IAHVHASFNN TIITITDQTG AETLAKSSGG TVVKQNRDEA SPYAAMQMAE  60
   61 VVAEKALDRG VEGVDVRVRG PGGNLQTSPG PGAQATIRAL ARAGLEIGRI EDVTPTPHDG 120
  121 TRAPKNSGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	2gy9K
Description:	No description for 2gy9K was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits