YRC Public Data Repository - Protein Structure Prediction

Protein:	TRPB_ECOLI
Organism:	Escherichia coli
Length:	397 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRPB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|71739840, gi\|... - gi\|71839674\|ref\|ZP_00679418.1\| Tryptophan synthase, beta chain [Pelobacter propionicus DSM 2379], gi...	442.0	[0..3]	[392..4]
gi\|86608975 - gi\|86608975\|ref\|YP_477737.1\| tryptophan synthase, beta subunit [Cyanobacteria bacterium Yellowstone ... TRPB_SYNJB - Tryptophan synthase beta chain OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=trpB PE=3 SV=1	440.0	[0..3]	[395..22]
TRPB_THETN - Tryptophan synthase beta chain OS=Thermoanaerobacter tengcongensis GN=trpB PE=3 SV=1 TRPB_CALS4 - Tryptophan synthase beta chain OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 152...	439.0	[0..5]	[395..1]
gi\|145588957, gi... - gi\|145588957\|ref\|YP_001155554.1\| tryptophan synthase subunit beta [Polynucleobacter necessarius subs...	439.0	[0..3]	[395..5]
gi\|77970857, gi\|... - gi\|78062972\|ref\|YP_372880.1\| tryptophan synthase subunit beta [Burkholderia sp. 383], gi\|77970857\|gb...	438.0	[0..3]	[395..5]
gi\|86605059 - gi\|86605059\|ref\|YP_473822.1\| tryptophan synthase, beta subunit [Cyanobacteria bacterium Yellowstone ... gi\|86553601, gi\|... - gi\|86605059\|ref\|YP_473822.1\| tryptophan synthase subunit beta [Synechococcus sp. JA-3-3Ab], gi\|86553...	437.0	[0..1]	[395..1]
gi\|56314179, gi\|... - gi\|56478136\|ref\|YP_159725.1\| tryptophan synthase subunit beta [Aromatoleum aromaticum EbN1], gi\|5631...	436.0	[0..3]	[389..9]
TRPB_THEPX - Tryptophan synthase beta chain OS=Thermoanaerobacter sp. (strain X514) GN=trpB PE=3 SV=1 gi\|242258267, gi... - gi\|242258267\|ref\|ZP_04803088.1\| tryptophan synthase, beta subunit [Thermoanaerobacter sp. X513], gi\|...	436.0	[0..5]	[395..1]
TRPB_AZOVD - Tryptophan synthase beta chain OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=trpB PE=3 SV... gi\|67154984, gi\|... - gi\|67154984\|ref\|ZP_00416729.1\| Tryptophan synthase, beta chain [Azotobacter vinelandii AvOP], ref\|ZP...	435.0	[0..3]	[396..10]
gi\|241904622, gi... - gi\|241904622\|ref\|ZP_04789303.1\| tryptophan synthase, beta subunit [Thermoanaerobacter brockii subsp.... TRPB_THEP3 - Tryptophan synthase beta chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=t...	435.0	[0..5]	[395..1]

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Predicted Domain #1

Region A:
Residues: [1-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLLNPYFG EFGGMYVPQI LMPALRQLEE AFVSAQKDPE FQAQFNDLLK NYAGRPTALT  60
   61 KCQNITAGTN TTLYLKREDL LHGGAHKTNQ VLGQALLAKR MGKTEIIAET GAGQHGVASA 120
  121 LASALLGLKC RIYMGAKDVE RQSPNVFRMR LMGAEVIPVH SGSATLKDAC NEALRDWSGS 180
  181 YETAHYMLGT AAGPHPYPTI VREFQRMIGE ETKAQILERE GRLPDAVIAC VGGGSNAIGM 240
  241 FADFINETNV GLIGVEPGGH GIETGEHGAP LKHGRVGIYF GMKAPMMQTE DGQIEESYSI 300
  301 SAGLDFPSVG PQHAYLNSTG RADYVSITDD EALEAFKTLC LHEGIIPALE SSHALAHALK 360
  361 MMRENPDKEQ LLVVNLSGRG DKDIFTVHDI LKARGEI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	119.0
Match:	2dh5A
Description:	No description for 2dh5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits