YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259069, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259069, gi|....

Description	E-value	Query Range	Subject Range
gi\|109644065, gi... - gi\|109646116\|ref\|ZP_01370036.1\| RNA polymerase, sigma 38 subunit, RpoS [Desulfitobacterium hafniense...	3.0E-44	[15..237]	[121..392]
gi\|116514229, gi... - gi\|116514229\|ref\|YP_813135.1\| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp. bul...	2.0E-43	[15..237]	[101..372]
gi\|104774139, gi... - gi\|104774139\|ref\|YP_619119.1\| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp. bul...	2.0E-43	[15..237]	[101..372]
gi\|89079310, gi\|... - gi\|89090874\|ref\|ZP_01163909.1\| Sigma-70 factor [Lactobacillus reuteri JCM 1112], gi\|89079310\|gb\|EAR5... gi\|227364887, gi... - gi\|227364887\|ref\|ZP_03848933.1\| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus reuter... gi\|227531077, gi... - gi\|227531077\|ref\|ZP_03961126.1\| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus reuter...	3.0E-43	[15..237]	[109..380]
gi\|69249285, gi\|... - gi\|69249285\|ref\|ZP_00604924.1\| Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 regi... gi\|48823945 - ref\|ZP_00285397.1\| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Enterococc...	3.0E-43	[15..237]	[98..369]
gi\|116494985, gi... - gi\|116494985\|ref\|YP_806719.1\| RNA polymerase sigma factor RpoD [Lactobacillus casei ATCC 334], gi\|11... gi\|191638497, gi... - gi\|191638497\|ref\|YP_001987663.1\| RNA polymerase sigma factor RpoD [Lactobacillus casei BL23], gi\|190... gi\|224453634 - gi\|224453634\|ref\|ZP_03662107.1\| RNA polymerase sigma factor RpoD [Lactobacillus paracasei subsp. par... gi\|227187324, gi... - gi\|227535009\|ref\|ZP_03965058.1\| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus paraca...	3.0E-43	[15..237]	[151..422]
gi\|89895793, gi\|... - gi\|89895793\|ref\|YP_519280.1\| RNA polymerase sigma factor RpoD [Desulfitobacterium hafniense Y51], gi...	3.0E-43	[15..237]	[96..367]
gi\|125973412, gi... - gi\|67916227\|ref\|ZP_00509945.1\| Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 regi...	4.0E-43	[15..237]	[87..358]
gi\|58254795, gi\|... - gi\|58337478\|ref\|YP_194063.1\| RNA polymerase sigma factor RpoD [Lactobacillus acidophilus NCFM], gi\|5...	4.0E-43	[15..237]	[85..356]
gi\|92089653, gi\|... - gi\|92089653\|ref\|ZP_01274588.1\| RNA polymerase sigma factor RpoD-like [Lactobacillus reuteri 100-23],...	4.0E-43	[15..237]	[109..380]

Back

Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFAAIGYM VREVFVFVSY VKNNAFPQPL SSDDERKYLE LMEQGDAQAR NLLIEHNLRL  60
   61 VAHIVKKFEN TGEDAEDLIS IGTIGLIKAI ESYSAGKGTK LATYAARCIE NEILMHLRVL 120
  121 KKTKKDVSLH DPIGQDKEGN EISLIDILKS ESEDVIDMIQ LSMELEKIKE YIDILDEREK 180
  181 EVIVKRFGLG LDKEKTQREI AKALGISRSY VSRIEKRALM KMFHEFVRAE KEKKAKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1iw7F
Description:	Sigma70
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits