YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263906, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263906, gi|....

Description	E-value	Query Range	Subject Range
gi\|88912059, gi\|... - gi\|88931788\|ref\|ZP_01137481.1\| Carbamoyl-phosphate synthase L chain, ATP-binding [Acidothermus cellu...	2.0E-44	[4..239]	[181..471]
gi\|4587113 - gi\|4587113\|dbj\|BAA76622.1\| RpoT [Mycobacterium leprae]	5.0E-44	[3..239]	[275..570]
gi\|219933076, gi... - gi\|221229969\|ref\|YP_002503385.1\| RNA polymerase sigma factor [Mycobacterium leprae Br4923], gi\|21993... gi\|15827492 - gi\|15827492\|ref\|NP_301755.1\| RNA polymerase sigma factor [Mycobacterium leprae TN] gi\|699190, gi\|45... - gi\|699190\|gb\|AAA62955.1\| rpoT [Mycobacterium leprae], gi\|4587111\|dbj\|BAA76621.1\| RpoT [Mycobacterium...	9.0E-44	[3..239]	[273..568]
gi\|213960104, gi... - gi\|213960104\|ref\|ZP_03388387.1\| RNA polymerase sigma factor RpoD [Propionibacterium acnes SK137], gi... gi\|50840117, gi\|... - gi\|50842515\|ref\|YP_055742.1\| RNA polymerase sigma factor [Propionibacterium acnes KPA171202], gi\|508...	5.0E-42	[4..239]	[209..500]
gi\|228748343, gi... - gi\|229013089\|ref\|ZP_04170254.1\| RNA polymerase sigma-35 factor [Bacillus mycoides DSM 2048], gi\|2287... gi\|89209419, gi\|... - gi\|89209419\|ref\|ZP_01187840.1\| Sigma-70 region 2:Sigma-70 region 4 [Bacillus weihenstephanensis KBAB...	8.0E-42	[1..239]	[1..239]
gi\|33863540, gi\|... - gi\|33863540\|ref\|NP_895100.1\| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT 9313...	8.0E-42	[3..239]	[152..455]
gi\|151360016, gi... - gi\|69288837\|ref\|ZP_00618470.1\| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region...	9.0E-42	[4..239]	[206..496]
gi\|119717187, gi... - gi\|71369155\|ref\|ZP_00659620.1\| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region...	1.0E-41	[4..239]	[199..489]
gi\|581664, gi\|629227 - pir\|\|S41307 transcription initiation factor sigma - Streptomyces griseus, gi\|581664\|emb\|CAA53564.1\| ...	1.0E-41	[4..239]	[214..504]
gi\|419699, gi\|153309 - pir\|\|JN0445 transcription initiation factor sigma homolog hrdE - Streptomyces aureofaciens, gi\|1533...	2.0E-41	[4..239]	[232..522]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKLKFYLVY LWYKVLLKLG IKTDEIYYIG GSEALPPPLT KEEEEVLLNK LPKGDQAARS  60
   61 LLIERNLRLV VYIARKFENT GINIEDLISI GTIGLIKAVN TFNPEKKIKL ATYASRCIEN 120
  121 EILMHLRRNN KNRSEVSFDE PLNIDWDGNE LLLSDVLGTD DDIITKDLEA TVDRHLLMKA 180
  181 LHQLNDREKQ IMELRFGLAG GEEKTQKDVA DMLGISQSYI SRLEKRIIKR LRKEFNKMV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	1l9uH
Description:	DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits