YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1196973
Organism:	Plasmid Ti
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1196973.

Description	E-value	Query Range	Subject Range
gi\|10955144, gi\|... - gi\|8572716\|gb\|AAF77162.1\| virB2 [Agrobacterium tumefaciens], pir\|\|B2AG55 virB2 protein precursor - A... VIRB2_AGRT9 - Protein virB2 OS=Agrobacterium tumefaciens (strain 15955) GN=virB2 PE=3 SV=1	124.0	[0..1]	[121..1]
gi\|86283929, gi\|... - gi\|86359827\|ref\|YP_471718.1\| transport secretion system IV, VirB2 protein [Rhizobium etli CFN 42], g...	117.0	[0..1]	[120..2]
gi\|18150993, gi\|... - gi\|18150993\|ref\|NP_542930.1\| putative mating pair formation protein [Pseudomonas putida], gi\|1807723...	116.0	[0..8]	[121..34]
gi\|5669003 - gi\|5669003\|gb\|AAD46129.1\|AF078924_8 putative TrbC [Plasmid pM3]	113.0	[0..9]	[121..35]
gi\|22726393, gi\|... - gi\|28558842\|ref\|NP_788102.1\| putative conjugal transfer protein [Ruegeria sp. PR1b], gi\|22726393\|gb\|...	111.0	[0..10]	[118..92]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCFERYRLH LNRLSLSNAM MRVISSCAPS LGGAMAWSIS SCGPAAAQSA GGGTDPATMV  60
   61 NNICTFILGP FGQSLAVLGI VAIGISWMFG RRSLGLVAGV VGGIVIMFGA SFLGQTLTGG 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.045757
Match:	PF04956.4
Description:	No description for PF04956.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits