YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149024736, gi...
Organism:	Rattus norvegicus
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149024736, gi....

Description	E-value	Query Range	Subject Range
gi\|34859197, gi\|... - gi\|34859197\|ref\|XP_345432.1\| PREDICTED: similar to RIKEN cDNA 3110001N18 [Rattus norvegicus], gi\|109...	191.0	[0..1]	[128..1]
gi\|109088596 - gi\|109088596\|ref\|XP_001082032.1\| PREDICTED: similar to 60S ribosomal protein L22 (Heparin-binding pr...	190.0	[0..1]	[119..1]
gi\|94384550, gi\|... - gi\|94384550\|ref\|XP_979887.1\| PREDICTED: similar to 60S ribosomal protein L22 (Heparin-binding protei...	186.0	[0..21]	[127..31]
gi\|46095635, gi\|... - gi\|71004334\|ref\|XP_756833.1\| hypothetical protein UM00686.1 [Ustilago maydis 521], ref\|XP_398301.1\| ...	184.0	[0..1]	[126..56]
gi\|113414782, gi... - gi\|30149441\|ref\|XP_114317.3\| PREDICTED: hypothetical protein XP_114317 [Homo sapiens], gi\|119598909\|...	184.0	[0..3]	[128..57]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVKKLVAK GGKKKKQVLK FTLDCTHPVE DGIMDAANFE QFLQERIKVN GKAGNLGGGV  60
   61 VTIERSKSKI TVTSEVPFSK RYLKYLTKKY LKKNNLRDWL RVVANSKESY ELRYFQINQD 120
  121 EEEEEDED

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	86.920819
Match:	PF01776.8
Description:	No description for PF01776.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits