YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPB_ECO57
Organism:	Escherichia coli O157:H7
Length:	460 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPB_ECO57.

Description	E-value	Query Range	Subject Range
ATPB_AGAAF - ATP synthase subunit beta, chloroplastic OS=Agapanthus africanus GN=atpB PE=3 SV=1	625.0	[0..2]	[460..19]
gi\|61968281 - gi\|61968281\|gb\|AAX57067.1\| ATP synthase beta subunit [Petalodiscus fadenii]	624.0	[0..2]	[457..7]
ATPB_IPOCC - ATP synthase subunit beta, chloroplastic OS=Ipomoea coccinea GN=atpB PE=3 SV=1	623.0	[0..2]	[460..19]
gi\|158430155, gi... - gi\|33329387\|gb\|AAQ10090.1\| ATP synthase subunit beta [Bacillus sp. TA2.A1], gi\|158430155\|pdb\|2QE7\|F ...	621.0	[0..1]	[460..1]
gi\|22651724 - gi\|22651724\|gb\|AAM26934.1\| ATP synthase beta subunit [Aldrovanda vesiculosa]	621.0	[0..2]	[460..16]
gi\|86605139 - gi\|86605139\|ref\|YP_473902.1\| ATP synthase F1, beta subunit [Cyanobacteria bacterium Yellowstone A-Pr... ATPB_SYNJA - ATP synthase subunit beta OS=Synechococcus sp. (strain JA-3-3Ab) GN=atpD PE=3 SV=1	621.0	[0..2]	[460..10]
gi\|226371 - gi\|226371\|prf\|\|1508208B ATPase beta	621.0	[0..1]	[460..1]
gi\|22651730 - gi\|22651730\|gb\|AAM26937.1\| ATP synthase beta subunit [Drosera regia]	620.0	[0..2]	[460..17]
ATPB_PECAS - ATP synthase subunit beta OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=atpD P... ATPB_ERWCT - ATP synthase subunit beta OS=Erwinia carotovora subsp. atroseptica GN=atpD PE=3 SV=1	620.0	[0..1]	[460..1]
ATPB_SALCH - ATP synthase subunit beta OS=Salmonella choleraesuis (strain SC-B67) GN=atpD PE=3 SV=1 gi\|238913118 - gi\|238913118\|ref\|ZP_04656955.1\| F0F1 ATP synthase subunit beta [Salmonella enterica subsp. enterica ... ATPB_SALPB - ATP synthase subunit beta OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpD PE=3 SV=1 ATPB_SALTY - ATP synthase subunit beta OS=Salmonella typhimurium GN=atpD PE=3 SV=1 ATPB_SALCH - ATP synthase subunit beta OS=Salmonella choleraesuis GN=atpD PE=3 SV=1 ATPB_SALTI - ATP synthase subunit beta OS=Salmonella typhi GN=atpD PE=3 SV=1 gi\|200387213, gi... - gi\|200387213\|ref\|ZP_03213825.1\| ATP synthase F1, beta subunit [Salmonella enterica subsp. enterica s... ATPB_SALDC - ATP synthase subunit beta OS=Salmonella dublin (strain CT_02021853) GN=atpD PE=3 SV=1 gi\|197263502, gi... - gi\|197263502\|ref\|ZP_03163576.1\| ATP synthase F1, beta subunit [Salmonella enterica subsp. enterica s... ATPB_SALA4 - ATP synthase subunit beta OS=Salmonella agona (strain SL483) GN=atpD PE=3 SV=1 gi\|213427470 - gi\|213427470\|ref\|ZP_03360220.1\| F0F1 ATP synthase subunit beta [Salmonella enterica subsp. enterica ... ATPB_SALCH - ATP synthase subunit beta OS=Salmonella choleraesuis GN=atpD PE=3 SV=1 gi\|213052670 - gi\|213052670\|ref\|ZP_03345548.1\| F0F1 ATP synthase subunit beta [Salmonella enterica subsp. enterica ... ATPB_SALTY - ATP synthase subunit beta OS=Salmonella typhimurium GN=atpD PE=3 SV=1 ATPB_SALEP - ATP synthase subunit beta OS=Salmonella enteritidis PT4 (strain P125109) GN=atpD PE=3 SV=1 gi\|204928445, gi... - gi\|204928445\|ref\|ZP_03219644.1\| ATP synthase F1, beta subunit [Salmonella enterica subsp. enterica s... gi\|195632484, gi... - gi\|195632484\|gb\|EDX50968.1\| ATP synthase F1, beta subunit [Salmonella enterica subsp. enterica serov... gi\|168263239, gi... - gi\|205348072\|gb\|EDZ34703.1\| ATP synthase F1, beta subunit [Salmonella enterica subsp. enterica serov... ATPB_SALSV - ATP synthase subunit beta OS=Salmonella schwarzengrund (strain CVM19633) GN=atpD PE=3 SV=1 gi\|194471110, gi... - gi\|194471110\|ref\|ZP_03077094.1\| ATP synthase F1, beta subunit [Salmonella enterica subsp. enterica s... ATPB_SALHS - ATP synthase subunit beta OS=Salmonella heidelberg (strain SL476) GN=atpD PE=3 SV=1 ATPB_SALNS - ATP synthase subunit beta OS=Salmonella newport (strain SL254) GN=atpD PE=3 SV=1 ATPB_SALTY - ATP synthase subunit beta OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=atpD PE... gi\|29139585, gi\|... - gi\|29143949\|ref\|NP_807291.1\| F0F1 ATP synthase subunit beta [Salmonella enterica subsp. enterica ser... ATPB_SALPB - ATP synthase subunit beta OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpD PE=3 SV=1 ATPB_SALAR - ATP synthase subunit beta OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=atpD... ATPB_SALTI - ATP synthase subunit beta OS=Salmonella typhi GN=atpD PE=3 SV=1 lcl\|NC_016856.1_... - [gene=atpD] [protein=F0F1 ATP synthase subunit beta] [protein_id=YP_005240133.1] [location=complemen... gi\|16762461 - gi\|16762461\|ref\|NP_458078.1\| F0F1 ATP synthase subunit beta [Salmonella enterica subsp. enterica ser... ATPB_SALPC - ATP synthase subunit beta OS=Salmonella paratyphi C (strain RKS4594) GN=atpD PE=3 SV=1 gi\|214001324 - gi\|214001324\|ref\|ZP_03412059.1\| F0F1 ATP synthase subunit beta [Salmonella enterica subsp. enterica ... gi\|213857970 - gi\|213857970\|ref\|ZP_03384941.1\| F0F1 ATP synthase subunit beta [Salmonella enterica subsp. enterica ... gi\|213586049 - gi\|213586049\|ref\|ZP_03367875.1\| F0F1 ATP synthase subunit beta [Salmonella enterica subsp. enterica ...	620.0	[0..1]	[460..1]

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Predicted Domain #1

Region A:
Residues: [1-460]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGKIVQVI GAVVDVEFPQ DAVPRVYDAL EVQNGNERLV LEVQQQLGGG IVRTIAMGSS  60
   61 DGLRRGLDVK DLEHPIEVPV GKATLGRIMN VLGEPVDMKG EIGEEERWAI HRAAPSYEEL 120
  121 SNSQELLETG IKVIDLMCPF AKGGKVGLFG GAGVGKTVNM MELIRNIAIE HSGYSVFAGV 180
  181 GERTREGNDF YHEMTDSNVI DKVSLVYGQM NEPPGNRLRV ALTGLTMAEK FRDEGRDVLL 240
  241 FVDNIYRYTL AGTEVSALLG RMPSAVGYQP TLAEEMGVLQ ERITSTKTGS ITSVQAVYVP 300
  301 ADDLTDPSPA TTFAHLDATV VLSRQIASLG IYPAVDPLDS TSRQLDPLVV GQEHYDTARG 360
  361 VQSILQRYQE LKDIIAILGM DELSEEDKLV VARARKIQRF LSQPFFVAEV FTGSPGKYVS 420
  421 LKDTIRGFKG IMEGEYDHLP EQAFYMVGSI EEAVEKAKKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	178.0
Match:	2qe7D
Description:	No description for 2qe7D was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits