YRC Public Data Repository - Protein Structure Prediction

Protein:	RL1_ECOLI
Organism:	Escherichia coli
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL1_ECOLI.

Description	E-value	Query Range	Subject Range
RL1_MOOTA - 50S ribosomal protein L1 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplA PE=3 SV=1	288.0	[0..1]	[226..1]
gi\|48835066 - ref\|ZP_00292068.1\| COG0081: Ribosomal protein L1 [Thermobifida fusca] RL1_THEFY - 50S ribosomal protein L1 OS=Thermobifida fusca (strain YX) GN=rplA PE=3 SV=1	286.0	[0..3]	[233..2]
RL1_STAEQ - 50S ribosomal protein L1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplA PE=3 SV=1 RL1_STAEP - (Q8CTT4) 50S ribosomal protein L1 gi\|242234648, gi... - gi\|242241870\|ref\|ZP_04796315.1\| 50S ribosomal protein L1 [Staphylococcus epidermidis W23144], gi\|242... gi\|251809955, gi... - gi\|251809955\|ref\|ZP_04824428.1\| 50S ribosomal protein L1 [Staphylococcus epidermidis BCM-HMP0060], g... RL1_STAES - 50S ribosomal protein L1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rplA PE=3 SV=1	284.0	[0..1]	[229..1]
RL1_STAAR - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain MRSA252) GN=rplA PE=3 SV=1 gi\|227557414, gi... - gi\|227557414\|ref\|ZP_03987461.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus MN8], ...	283.0	[0..1]	[229..1]
RL1_MARMM - 50S ribosomal protein L1 OS=Maricaulis maris (strain MCS10) GN=rplA PE=3 SV=1	283.0	[0..1]	[232..1]
gi\|88922312, gi\|... - gi\|88938864\|ref\|ZP_01144316.1\| ribosomal protein L1 [Acidiphilium cryptum JF-5], gi\|88922312\|gb\|EAR4...	283.0	[0..1]	[231..258]
RL1_STAAS - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain MSSA476) GN=rplA PE=3 SV=1 RL1_STAAB - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rplA PE=3 SV=1 RL1_STAAE - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain Newman) GN=rplA PE=3 SV=1 RL1_STAA2 - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain JH1) GN=rplA PE=3 SV=1 RL1_STAAT - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplA PE=3 SV=1 RL1_STAA9 - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain JH9) GN=rplA PE=3 SV=1 gi\|269202161\|ref... - 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus ED98] RL1_STAA8 - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplA PE=3 SV=1 RL1_STAA3 - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain USA300) GN=rplA PE=3 SV=1 RL1_STAA1 - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplA PE=3 SV=1 gi\|227852234, gi... - gi\|227899471\|ref\|ZP_04017276.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus TCH60]... gi\|251802989, gi... - gi\|251813487\|ref\|ZP_04827960.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus TCH70]... gi\|253315648 - gi\|253315648\|ref\|ZP_04838861.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus str. C... gi\|87128269\|gb\|A... - ribosomal protein L1 [Staphylococcus aureus subsp. aureus USA300], ribosomal protein L1 [Staphylococ... gi\|253731143, gi... - gi\|253731143\|ref\|ZP_04865308.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus USA300... gi\|221139611 - gi\|221139611\|ref\|ZP_03564410.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus str. J... gi\|253732546, gi... - gi\|253732546\|ref\|ZP_04866711.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus TCH130... gi\|221141025 - gi\|221141025\|ref\|ZP_03565518.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus str. J... gi\|255005332 - gi\|255005332\|ref\|ZP_05143933.2\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus Mu50-o... RL1_STAAW - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain MW2) GN=rplA PE=3 SV=1 RL1_STAAM - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplA PE=3 SV=1 RL1_STAAC - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain COL) GN=rplA PE=3 SV=1	282.0	[0..1]	[229..1]
gi\|227903261, gi... - gi\|227903261\|ref\|ZP_04021066.1\| 50S ribosomal protein L1 [Lactobacillus acidophilus ATCC 4796], gi\|2... RL1_LACAC - 50S ribosomal protein L1 OS=Lactobacillus acidophilus GN=rplA PE=3 SV=1 RL1_LACAC - 50S ribosomal protein L1 OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=rp...	280.0	[0..1]	[229..1]
RL1_STAAN - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain N315) GN=rplA PE=1 SV=1 gi\|25294922 - pir\|\|D89821 50S ribosomal protein L1 [imported] - Staphylococcus aureus (strain N315)	280.0	[0..1]	[229..1]
RL1_PROAC - 50S ribosomal protein L1 OS=Propionibacterium acnes (strain KPA171202 / DSM 16379) GN=rplA PE=3 SV=1 RL1_PROAC - 50S ribosomal protein L1 OS=Propionibacterium acnes GN=rplA PE=3 SV=1	280.0	[0..3]	[232..2]

Back

Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLTKRMRV IREKVDATKQ YDINEAIALL KELATAKFVE SVDVAVNLGI DARKSDQNVR  60
   61 GATVLPHGTG RSVRVAVFTQ GANAEAAKAA GAELVGMEDL ADQIKKGEMN FDVVIASPDA 120
  121 MRVVGQLGQV LGPRGLMPNP KVGTVTPNVA EAVKNAKAGQ VRYRNDKNGI IHTTIGKVDF 180
  181 DADKLKENLE ALLVALKKAK PTQAKGVYIK KVSISTTMGA GVAVDQAGLS ASVN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.0
Match:	2gya2
Description:	No description for 2gya2 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits