YRC Public Data Repository - Protein Structure Prediction

Protein:	RK23_SACOF
Organism:	Saccharum officinarum
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RK23_SACOF.

Description	E-value	Query Range	Subject Range
gi\|46561796 - gi\|46561796\|gb\|AAT01117.1\| rpL23-ScFv fusion protein [rpL23-fusion expression vector pScFV]	133.0	[0..1]	[90..8]
RL23_ROSS1 - 50S ribosomal protein L23 OS=Roseiflexus sp. (strain RS-1) GN=rplW PE=3 SV=1	127.0	[0..2]	[90..5]
RL23_PROMM - 50S ribosomal protein L23 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplW PE=3 SV=1	127.0	[0..2]	[90..11]
gi\|46561792 - gi\|46561792\|gb\|AAT01114.1\| rpL23-SA fusion protein [rpL23-fusion expression vector pSA]	127.0	[0..1]	[90..8]
RL23_SYNS3 - 50S ribosomal protein L23 OS=Synechococcus sp. (strain CC9311) GN=rplW PE=3 SV=1	126.0	[0..2]	[90..11]
gi\|116075765, gi... - gi\|116075765\|ref\|ZP_01473024.1\| 50S ribosomal protein L23 [Synechococcus sp. RS9916], gi\|116067080\|g...	126.0	[0..2]	[90..11]
gi\|88787925, gi\|... - gi\|88807886\|ref\|ZP_01123397.1\| 50S ribosomal protein L23 [Synechococcus sp. WH 7805], gi\|88787925\|gb...	126.0	[0..2]	[90..11]
gi\|87300911, gi\|... - gi\|87300911\|ref\|ZP_01083753.1\| 50S ribosomal protein L23 [Synechococcus sp. WH 5701], gi\|87284782\|gb...	126.0	[0..2]	[90..11]
RL23_SYNPX - 50S ribosomal protein L23 OS=Synechococcus sp. (strain WH8102) GN=rplW PE=3 SV=1	126.0	[0..2]	[90..11]
RL23_SYNS9 - 50S ribosomal protein L23 OS=Synechococcus sp. (strain CC9902) GN=rplW PE=3 SV=1 gi\|116064449, gi... - gi\|116072562\|ref\|ZP_01469828.1\| 50S ribosomal protein L23 [Synechococcus sp. BL107], gi\|116064449\|gb...	125.0	[0..2]	[90..11]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGIKYAVFT EKSLRLLGKN QYTFNVESGF TKTEIKHWVE LFFGVKVVAV NSHRLPGKGR  60
   61 RMGPILGHTM HYRRMIITLQ PGYSIPLLDR ETN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.30103
Match:	1nwxR
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.53227268665795	bayes_pls_golite062009
structural molecule activity	3.24319212599242	bayes_pls_golite062009
nucleic acid binding	0.0217942967105049	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: