YRC Public Data Repository - Protein Structure Prediction

Protein:	RBFA_HAEIN
Organism:	Haemophilus influenzae Rd KW20
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBFA_HAEIN.

Description	E-value	Query Range	Subject Range
RBFA_ACTSZ - Ribosome-binding factor A OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rbfA PE=3 SV=...	163.0	[0..1]	[128..1]
gi\|144978858, gi... - gi\|145629355\|ref\|ZP_01785154.1\| ribosome-binding factor A [Haemophilus influenzae 22.1-21], gi\|14497... gi\|53732695 - gi\|53732695\|ref\|ZP_00349548.1\| COG0858: Ribosome-binding factor A [Haemophilus influenzae R2846] RBFA_HAEI8 - Ribosome-binding factor A OS=Haemophilus influenzae (strain 86-028NP) GN=rbfA PE=3 SV=1 gi\|46133543 - gi\|46133543\|ref\|ZP_00203198.1\| COG0858: Ribosome-binding factor A [Haemophilus influenzae R2866] RBFA_HAEIE - Ribosome-binding factor A OS=Haemophilus influenzae (strain PittEE) GN=rbfA PE=3 SV=1 gi\|145641331, gi... - gi\|145641331\|ref\|ZP_01796910.1\| ribosome-binding factor A [Haemophilus influenzae R3021], gi\|1449837... gi\|145268999, gi... - gi\|145637806\|ref\|ZP_01793455.1\| ribosome-binding factor A [Haemophilus influenzae PittHH], gi\|145268... gi\|229846816, gi... - gi\|229846816\|ref\|ZP_04466923.1\| ribosome-binding factor A [Haemophilus influenzae 7P49H1], gi\|229810... gi\|145634362, gi... - gi\|145634362\|ref\|ZP_01790072.1\| ribosome-binding factor A [Haemophilus influenzae PittAA], gi\|145268... gi\|229845103, gi... - gi\|229845103\|ref\|ZP_04465238.1\| ribosome-binding factor A [Haemophilus influenzae 6P18H1], gi\|229811... gi\|144986084, gi... - gi\|145633238\|ref\|ZP_01788969.1\| ribosome-binding factor A [Haemophilus influenzae 3655], gi\|14498608... gi\|145630826, gi... - gi\|145641331\|ref\|ZP_01796910.1\| ribosome-binding factor A [Haemophilus influenzae R3021], gi\|1456308...	162.0	[0..1]	[128..1]
gi\|49077912 - gi\|49077912\|gb\|AAT49730.1\| PA4743 [synthetic construct]	160.0	[0..1]	[126..1]
gi\|91074162, gi\|... - gi\|91212588\|ref\|YP_542574.1\| ribosome-binding factor A [Escherichia coli UTI89], gi\|91074162\|gb\|ABE0... gi\|237706080, gi... - gi\|237706080\|ref\|ZP_04536561.1\| ribosome-binding factor A [Escherichia sp. 3_2_53FAA], gi\|226899120\|... gi\|26249750, gi\|... - gi\|26249750\|ref\|NP_755790.1\| ribosome-binding factor A [Escherichia coli CFT073], gi\|26110178\|gb\|AAN... gi\|24053639, gi\|... - ref\|NP_708968.1\| ribosome-binding factor A [Shigella flexneri 2a str. 301], gb\|AAN44675.1\| ribosome... gi\|226839957, gi... - gi\|254038333\|ref\|ZP_04872391.1\| ribosome-binding factor A [Escherichia sp. 1_1_43], gi\|226839957\|gb\|...	160.0	[0..1]	[128..7]
RBFA_PSEA8 - Ribosome-binding factor A OS=Pseudomonas aeruginosa (strain LESB58) GN=rbfA PE=3 SV=1 gi\|194555340, gi... - gi\|84323600\|ref\|ZP_00971669.1\| COG0858: Ribosome-binding factor A [Pseudomonas aeruginosa 2192], gi\|... gi\|107103842 - gi\|107103842\|ref\|ZP_01367760.1\| hypothetical protein PaerPA_01004913 [Pseudomonas aeruginosa PACS2]	160.0	[0..1]	[127..1]
RBFA_PASMU - Ribosome-binding factor A OS=Pasteurella multocida (strain Pm70) GN=rbfA PE=3 SV=1 RBFA_PASMU - Ribosome-binding factor A OS=Pasteurella multocida GN=rbfA PE=3 SV=1	160.0	[0..1]	[127..1]
RBFA_PSEF5 - Ribosome-binding factor A OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rbfA PE=3 SV=1	160.0	[0..1]	[124..1]
RBFA_PSEAB - Ribosome-binding factor A OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rbfA PE=3 SV=1 RBFA_PSEAE - Ribosome-binding factor A OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1... RBFA_PSEAE - Ribosome-binding factor A OS=Pseudomonas aeruginosa GN=rbfA PE=3 SV=1	159.0	[0..1]	[126..1]
RBFA_MANSM - Ribosome-binding factor A OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rbfA PE=3 SV=1	159.0	[0..1]	[128..1]
gi\|32033693 - gi\|32033693\|ref\|ZP_00133988.1\| COG0858: Ribosome-binding factor A [Actinobacillus pleuropneumoniae s... RBFA_ACTPJ - Ribosome-binding factor A OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rbfA PE=3 S... RBFA_ACTP2 - Ribosome-binding factor A OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rbfA PE=3 S... RBFA_ACTP7 - Ribosome-binding factor A OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rbfA PE=3 S...	159.0	[0..1]	[127..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAREFKRSDR VAQEIQKEIA VILQREVKDP RIGMVTVSDV EVSSDLSYAK IFVTFLFDHD  60
   61 EMAIEQGMKG LEKASPYIRS LLGKAMRLRI VPEIRFIYDQ SLVEGMRMSN LVTNVVREDE 120
  121 KKHVEESN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.39794
Match:	1josA
Description:	Ribosome-binding factor A, RbfA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	1.78763405231681	bayes_pls_golite062009
nucleic acid binding	0.83586229977035	bayes_pls_golite062009
catalytic activity	0.640244199484628	bayes_pls_golite062009
binding	0.519389427071401	bayes_pls_golite062009
rRNA binding	0.22053492547658	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: