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View Structure Prediction Details

Protein: gi|33866398, gi|...
Organism: Synechococcus sp. WH 8102
Length: 187 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33866398, gi|....

Description E-value Query
Range
Subject
Range
gi|22299584, gi|... - gi|22299584|ref|NP_682831.1| hypothetical protein tlr2041 [Thermosynechococcus elongatus BP-1], gi|2...
219.0 [0..1] [179..3]

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Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEMSVAGIA LEAASRTPIV LLRDPSGRRQ VPIWIDQSQA HNIMAGLQGA EPPRPLSHDL  60
   61 MAALLVAGGL ELERVIVHAI EDSTFHAVLK LRQNDPMDAA AEGDVILHDV DARPSDAIAL 120
  121 AVRTGSTIWM LEEVVAEASI AVDAEADARD QSDFNRFVDD LSPAALVKHL RNRGEGEDPE 180
  181 QTDPDRG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.522879
Match: 1vjlA
Description: CRYSTAL STRUCTURE OF PREDICTED PROTEIN RELATED TO WOUND INDUCIVE PROTEINS IN PLANTS (TM0160) FROM THERMOTOGA MARITIMA AT 1.90 A RESOLUTION
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle