YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|279921
Organism:	Human immunodeficiency virus 1
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|279921.

Description	E-value	Query Range	Subject Range
gi\|15788265 - gi\|15788265\|gb\|AAL07716.1\| rev protein [Human immunodeficiency virus 1]	232.0	[0..1]	[116..1]
REV_HV1BR - Protein Rev OS=Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) GN=rev PE=1 S... gi\|326419 - gi\|326419\|gb\|AAB59746.1\| rev protein [Human immunodeficiency virus 1] gi\|295267 - gi\|295267\|gb\|AAA72835.1\| rev protein [synthetic construct] gi\|132420 - sp\|P04620\|REV_HV1BR REV protein (Anti-repression transactivator protein) (ART/TRS)	207.0	[0..1]	[116..1]

Back

Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRSGDSDE DLLRTVRLIK VLYQSNPPPS SEGTRQARRN RRRRWRERQR QIRSISGWLL  60
   61 SNYLGRPTEP VPFQLPPLER LTLDCNEDCG TSGTQGVGSP QILVESPPVL DSGTKE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.387216
Match:	PF00424.9
Description:	No description for PF00424.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits