YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2144646
Organism:	Sus scrofa domesticus
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2144646.

Description	E-value	Query Range	Subject Range
gi\|119588900 - gi\|119588900\|gb\|EAW68494.1\| parathyroid hormone, isoform CRA_a [Homo sapiens] gi\|55635601 - gi\|55635601\|ref\|XP_521846.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	182.0	[0..1]	[115..33]
PTHY_FELCA - Parathyroid hormone OS=Felis catus GN=PTH PE=3 SV=1	178.0	[0..1]	[115..1]
PTHY_CANLF - Parathyroid hormone OS=Canis lupus familiaris GN=PTH PE=3 SV=1	176.0	[0..1]	[115..1]
gi\|114636278 - gi\|114636278\|ref\|XP_001171819.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] gi\|208968649 - gi\|208968649\|dbj\|BAG74163.1\| parathyroid hormone [synthetic construct] PTH - parathyroid hormone	173.0	[0..1]	[115..1]
PTHY_BOVIN - Parathyroid hormone OS=Bos taurus GN=PTH PE=1 SV=1	173.0	[0..1]	[115..1]
CCDS7812.1_1 - null gi\|109107219 - gi\|109107219\|ref\|XP_001094024.1\| PREDICTED: parathyroid hormone [Macaca mulatta] PTHY_MACFA - Parathyroid hormone OS=Macaca fascicularis GN=PTH PE=3 SV=1	173.0	[0..1]	[115..1]
PTHY_HORSE - Parathyroid hormone OS=Equus caballus GN=PTH PE=3 SV=1	171.0	[0..1]	[115..1]
gi\|4092930, gi\|6... - gi\|74216176\|dbj\|BAE23743.1\| unnamed protein product [Mus musculus], gi\|68534186\|gb\|AAH99456.1\| Parat...	161.0	[0..1]	[115..1]
PTHY_RAT - Parathyroid hormone OS=Rattus norvegicus GN=Pth PE=2 SV=1	160.0	[0..1]	[115..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSAKDTVKV MVVMLAICFL ARSDGKPIKK RSVSEIQLMH NLGKHLSSLE RVEWLRKKLQ  60
   61 DVHNFVALGA SIVHRDGGSQ RPRKKEDNVL VESHQKSLGE ADKAAVDVLI KAKPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	68.468521
Match:	PF01279.8
Description:	No description for PF01279.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits