YRC Public Data Repository - Protein Structure Prediction

Protein:	CN112_PONPY
Organism:	Pongo pygmaeus
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CN112_PONPY.

Description	E-value	Query Range	Subject Range
COX16_MOUSE - Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial OS=Mus musculus GN=Cox16 PE=3 SV=...	2.0E-38	[1..106]	[1..106]
gi\|109084122 - gi\|109084122\|ref\|XP_001111003.1\| PREDICTED: synaptojanin 2 binding protein isoform 2 [Macaca mulatta...	2.0E-37	[1..106]	[1..106]
gi\|114653714 - gi\|114653714\|ref\|XP_001145461.1\| PREDICTED: similar to HSPC203 isoform 3 [Pan troglodytes]	3.0E-37	[1..106]	[1..106]
COX16_BOVIN - Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial OS=Bos taurus GN=COX16 PE=3 SV=1	2.0E-34	[1..106]	[1..106]
gi\|73964244 - gi\|73964244\|ref\|XP_854475.1\| PREDICTED: similar to Protein C14orf112 precursor [Canis familiaris]	3.0E-29	[24..106]	[226..308]
COX16_NEUCR - Cytochrome c oxidase assembly protein cox16, mitochondrial OS=Neurospora crassa (strain ATCC 24698 /... COX16_NEUCR - Cytochrome c oxidase assembly protein cox-16, mitochondrial OS=Neurospora crassa GN=cox-16 PE=3 SV=1	8.0E-29	[2..93]	[17..114]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAPAVMRAF RKNKTLGYGV PMLLLIVGGS FGLREFSQIR YDAVKSKMDP ELEKKLKENK  60
   61 ISLESEYEKI KDSKFDDWKN IRGPRPWEDP DLLQGRNPES LKTKTT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.423	a.4.1	Homeodomain-like
View	Download	0.218	d.58.36	Sulfite reductase, domains 1 and 3
View	Download	0.203	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits