YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55632251
Organism:	Pan troglodytes
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55632251.

Description	E-value	Query Range	Subject Range
gi\|109498722 - gi\|109498722\|ref\|XP_001065881.1\| PREDICTED: similar to ATPase, H+ transporting, V1 subunit G, isofor...	159.0	[0..1]	[115..105]
VATG1_BOVIN - V-type proton ATPase subunit G 1 OS=Bos taurus GN=ATP6V1G1 PE=1 SV=3	140.0	[0..1]	[118..1]
gi\|109149627, gi... - gi\|109149627\|ref\|XP_001084453.1\| PREDICTED: similar to vacuolar H+ ATPase G1 [Macaca mulatta], gi\|10... CCDS6807.1_1 - null	139.0	[0..1]	[118..1]
VATG1_MOUSE - V-type proton ATPase subunit G 1 OS=Mus musculus GN=Atp6v1g1 PE=1 SV=3	138.0	[0..1]	[118..1]
gi\|114626332 - gi\|114626332\|ref\|XP_001155506.1\| PREDICTED: similar to vacuolar H(+)-ATPase subunit isoform 1 [Pan t...	136.0	[0..1]	[118..1]
gi\|33585956, gi\|... - gi\|33585956\|gb\|AAH56050.1\| Atp6v1g1 protein [Xenopus laevis], gi\|148231664\|ref\|NP_001080436.1\| ATPas...	134.0	[0..1]	[118..1]
gi\|123232990, gi... - gi\|41152466\|ref\|NP_956228.1\| vacuolar H+ ATPase G1 [Danio rerio], gi\|37590382\|gb\|AAH59611.1\| ATPase,... gi\|166158146, gi... - gi\|166158146\|ref\|NP_001107476.1\| hypothetical protein LOC100135327 [Xenopus (Silurana) tropicalis], ...	133.0	[0..1]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQSQGIQQ LLQAEKRAAE KVSEARKRKN RRLKQAKEEA QAEIEQYRLQ REKEFKAKEA  60
   61 AALGSRGSCS TEVEKETQEK MTILQTYFRQ NRDEVLDNLL AFVCDIRPEI HENYRING

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	55.468521
Match:	PF03179.6
Description:	No description for PF03179.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits