YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUS5_PANTR
Organism:	Pan troglodytes
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUS5_PANTR.

Description	E-value	Query Range	Subject Range
gi\|73976897 - gi\|73976897\|ref\|XP_532550.2\| PREDICTED: similar to NADH-ubiquinone oxidoreductase 15 kDa subunit (Co...	177.0	[0..1]	[106..125]
gi\|109090224 - gi\|109090224\|ref\|XP_001106653.1\| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (N...	176.0	[0..1]	[106..1]
NDUS5_GORGO - NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Gorilla gorilla gorilla GN=NDUFS5 PE=3 SV=3 gi\|111661859 - gi\|111661859\|gb\|ABH12170.1\| mitochondrial complex I subunit NDUFS5 [Gorilla gorilla]	176.0	[0..1]	[106..1]
NDUS5_MACFA - NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Macaca fascicularis GN=NDUFS5 PE=3 SV=3	176.0	[0..1]	[106..1]
gi\|207080042 - gi\|207080042\|ref\|NP_001128791.1\| DKFZP468J0613 protein [Pongo abelii] gi\|55728334 - gi\|55728334\|emb\|CAH90911.1\| hypothetical protein [Pongo abelii]	173.0	[0..1]	[106..1]
gi\|114668408 - gi\|114668408\|ref\|XP_511369.2\| PREDICTED: hypothetical protein [Pan troglodytes]	172.0	[0..1]	[106..1]
NDUS5_BOVIN - NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Bos taurus GN=NDUFS5 PE=1 SV=2	169.0	[0..1]	[105..1]
gi\|27693507, gi\|... - gi\|72086149\|ref\|NP_001025223.1\| NADH dehydrogenase (ubiquinone) Fe-S protein 5b [Rattus norvegicus],...	167.0	[0..1]	[106..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFLDIQKRF GLNIDRWLTI QSGEQPYKMA GRCHAFEKEW IECAHGIGYT RAEKECKIEY  60
   61 DDFVECLLRQ KTMRRAGTIR KQRDKLIKEG KYTPPPHHIG KGEPRP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits