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View Structure Prediction Details

Protein: gi|30063490, gi|...
Organism: Shigella flexneri 2a str. 2457T
Length: 292 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30063490, gi|....

Description E-value Query
Range
Subject
Range
gi|50982497 - gi|50982497|gb|AAT91851.1| glucose-1-phosphatate thymidylyltransferase [Shigella dysenteriae]
gi|81241581, gi|... - gi|82777433|ref|YP_403782.1| glucose-1-phosphate thymidylyltransferase [Shigella dysenteriae Sd197],...
314.0 [0..1] [292..1]
gi|46985 - gi|46985|emb|CAA43074.1| glucose-1-phosphate thymidylyltransferase [Salmonella enterica]
gi|96668 - pir||S23342 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) [validated] - Salmonella cholera...
RMLA_SALAN - Glucose-1-phosphate thymidylyltransferase OS=Salmonella anatum GN=rmlA PE=3 SV=1
314.0 [0..1] [292..1]
gi|46451853 - gi|46451853|gb|AAS98028.1| RmlA [Shigella boydii]
314.0 [0..1] [292..1]
gi|73809579 - gi|73809579|gb|AAZ85705.1| glucose-1-phosphate thymidylyltransferase [Escherichia coli]
313.0 [0..1] [292..1]
gi|157157449, gi... - gi|75186837|ref|ZP_00700104.1| COG1209: dTDP-glucose pyrophosphorylase [Escherichia coli E24377A], g...
313.0 [0..1] [292..1]
gi|9957817 - gi|9957817|gb|AAG09500.1|AF279615_3 glucose-1-phosphate thymidylyltransferase [Salmonella enterica]
313.0 [0..1] [292..1]
gi|110806008, gi... - gi|110806008|ref|YP_689528.1| glucose-1-phosphate thymidylyltransferase [Shigella flexneri 5 str. 84...
313.0 [0..1] [292..1]

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Predicted Domain #1
Region A:
Residues: [1-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTRKGIILA GGSGTRLYPV TMAVSKQLLP IYDKPMIYYP LSTLMLAGIR DILIISTPQD  60
   61 TPRFQQLLGD GSQWGLNLQY KVQPSPDGLA QAFIIGEEFI GGDDCALVLG DNIFYGHDLP 120
  121 KLMDTAVNRE SGATVFAYHV NDPERYGVVE FDDNGTAISL EEKPQEPKSN YAVTGLYFYD 180
  181 NDVVEMAKNL KPSARGELEI TDINRIYMDQ GRLSVAMMGR GYAWLDTGTH QSLIEASNFI 240
  241 ATIEERQGLK VSCPEEIAHR KGFIDAEQVK VLAEPLKKNA YGQYLLKMIK GY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.0
Match: 1h5rB
Description: RmlA (RfbA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
uridylyltransferase activity 3.74072767898515 bayes_pls_golite062009
transferase activity, transferring hexosyl groups 2.70047942699289 bayes_pls_golite062009
UTP:glucose-1-phosphate uridylyltransferase activity 2.65167602524122 bayes_pls_golite062009
UTP-monosaccharide-1-phosphate uridylyltransferase activity 2.46432078102948 bayes_pls_golite062009
UDP-glycosyltransferase activity 2.33861720107822 bayes_pls_golite062009
transferase activity 2.17535315350752 bayes_pls_golite062009
catalytic activity 1.88676710996045 bayes_pls_golite062009
acetylgalactosaminyltransferase activity 1.33788133706753 bayes_pls_golite062009
nucleotidyltransferase activity 1.17054423506287 bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity 1.10309252319727 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.02084820914491 bayes_pls_golite062009
cytidylyltransferase activity 0.983416157001861 bayes_pls_golite062009
mannosyltransferase activity 0.91123217364068 bayes_pls_golite062009
transferase activity, transferring glycosyl groups 0.897978517422275 bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity 0.513376694534047 bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity 0.2363835251362 bayes_pls_golite062009
guanylyltransferase activity 0.0539392112504681 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle