YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15826255, gi\|...
Organism:	Homo sapiens
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15826255, gi|....

Description	E-value	Query Range	Subject Range
gi\|4878035, gi\|4... - gi\|4878035\|gb\|AAD24546.2\| neurocan core protein precursor [Gallus gallus], gi\|45382043\|ref\|NP_990071...	132.0	[0..2]	[116..1066]
gi\|76620854 - gi\|76620854\|ref\|XP_885383.1\| PREDICTED: similar to Neurocan core protein precursor (Chondroitin sulf...	129.0	[0..2]	[116..1099]
gi\|4501991, gi\|1... - gi\|4501991\|ref\|NP_001126.1\| aggrecan 1 isoform 1 precursor [Homo sapiens], gi\|178259\|gb\|AAA62824.1\| ...	129.0	[0..2]	[116..2177]
gi\|109082372 - gi\|109082372\|ref\|XP_001091462.1\| PREDICTED: aggrecan 1 [Macaca mulatta]	129.0	[0..2]	[116..1344]
gi\|73986046 - gi\|73986046\|ref\|XP_541924.2\| PREDICTED: similar to Neurocan core protein precursor (Chondroitin sulf...	129.0	[0..2]	[116..1103]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TCRYLLVRSL QTFSQAWFTC RRCYRGNLVS IHNFNINYRI QCSVSALNQG QVWIGGRITG  60
   61 SGRCRRFQWV DGSRWNFAYW AAHQPWSRGG HCVALCTRGG YWRRAHCLRR LPFICSY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1h8uA
Description:	Eosinophil major basic protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits