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View Structure Prediction Details

Protein: gi|279924
Organism: Human immunodeficiency virus 1
Length: 97 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|279924.

Description E-value Query
Range
Subject
Range
gi|1477848, gi|1... - gi|1477848|gb|AAB05507.1| vpr protein [Human immunodeficiency virus type 1], gi|1477846|gb|AAB05506....
198.0 [0..1] [97..1]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQAPEDQGP QREPHNEWTL ELLEELKREA VRHFPRPWLH GLGQHIYETY GDTWAGVEAI  60
   61 IRILQQLLFI HFRIGCQHSR IGIIQQRRAR RNGASRS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.69897
Match: 1esxA
Description: VPR protein fragments
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle