YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIE_ECOLI
Organism:	Escherichia coli
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|37199415, gi\|... - gi\|37680666\|ref\|NP_935275.1\| flagellar hook-basal body protein [Vibrio vulnificus YJ016], gi\|3719941...	107.0	[0..4]	[104..22]
gi\|91191629, gi\|... - gi\|91223543\|ref\|ZP_01258808.1\| flagellar hook-basal body protein FliE [Vibrio alginolyticus 12G01], ...	105.0	[0..4]	[104..28]
gi\|75856755, gi\|... - gi\|75856755\|ref\|ZP_00764378.1\| COG1677: Flagellar hook-basal body protein [Vibrio sp. Ex25], gi\|1161...	105.0	[0..4]	[104..28]
gi\|153836964, gi... - gi\|153836964\|ref\|ZP_01989631.1\| flagellar hook-basal body complex protein (FliE) [Vibrio parahaemoly... gi\|28899024, gi\|... - gi\|28899024\|ref\|NP_798629.1\| flagellar hook-basal body protein FliE [Vibrio parahaemolyticus RIMD 22... gi\|28807243, gi\|... - gi\|7327275\|gb\|AAF59654.1\| FliE [Vibrio parahaemolyticus], gi\|28807243\|dbj\|BAC60513.1\| flagellar hook...	105.0	[0..4]	[104..3]
gi\|161486614 - gi\|161486614\|ref\|NP_935275.2\| flagellar hook-basal body protein FliE [Vibrio vulnificus YJ016] gi\|27365279, gi\|... - gi\|27365279\|ref\|NP_760807.1\| flagellar hook-basal body protein FliE [Vibrio vulnificus CMCP6], gi\|27...	103.0	[0..4]	[104..3]
gi\|9656685, gi\|1... - gi\|9656685\|gb\|AAF95279.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae O1 biovar ... gi\|11354923 - pir\|\|F82114 flagellar hook-basal body complex protein FliE VC2134 [imported] - Vibrio cholerae (stra... gi\|150422701, gi... - gi\|254291371\|ref\|ZP_04962164.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae AM-1... gi\|153828648, gi... - gi\|153828648\|ref\|ZP_01981315.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae 623-... gi\|121548940, gi... - gi\|121586773\|ref\|ZP_01676555.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae 2740... gi\|149740747, gi... - gi\|153825596\|ref\|ZP_01978263.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae MZO-... gi\|254844925, gi... - gi\|254849220\|ref\|ZP_05238570.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae MO10... gi\|227118580, gi... - gi\|227118580\|ref\|YP_002820476.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae O39... gi\|153213273, gi... - gi\|153213273\|ref\|ZP_01948685.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae 1587... gi\|121727197, gi... - gi\|121727197\|ref\|ZP_01680364.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae V52]... gi\|227082259, gi... - gi\|227082259\|ref\|YP_002810810.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae M66... gi\|124122811, gi... - gi\|153801634\|ref\|ZP_01956220.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae MZO-... gi\|124118082, gi... - gi\|153223616\|ref\|ZP_01953970.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae MAK ... gi\|153818994, gi... - gi\|153818994\|ref\|ZP_01971661.1\| flagellar hook-basal body complex protein FliE [Vibrio cholerae NCTC...	99.0	[0..4]	[104..9]
gi\|58582223, gi\|... - gi\|58582223\|ref\|YP_201239.1\| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331], gi\|5842681...	99.0	[0..15]	[104..82]
gi\|221562890, gi... - gi\|222053601\|ref\|YP_002535963.1\| flagellar hook-basal body complex subunit FliE [Geobacter sp. FRC-3...	98.0	[0..4]	[104..3]
gi\|45436239, gi\|... - gi\|45441379\|ref\|NP_992918.1\| flagellar basal body protein [Yersinia pestis biovar Microtus str. 9100...	98.0	[0..3]	[104..22]
gi\|218321841, gi... - gi\|218708822\|ref\|YP_002416443.1\| flagellar hook-basal body protein FliE [Vibrio splendidus LGP32], g... gi\|86146137, gi\|... - gi\|86146137\|ref\|ZP_01064463.1\| flagellar hook-basal body protein [Vibrio sp. MED222], gi\|85836084\|gb...	98.0	[0..4]	[104..3]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAIQGIEGV ISQLQATAMS ARAQESLPQP TISFAGQLHA ALDRISDTQT AARTQAEKFT  60
   61 LGEPGVALND VMTDMQKASV SMQMGIQVRN KLVAAYQEVM SMQV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	49.0
Match:	PF02049.9
Description:	No description for PF02049.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits