YRC Public Data Repository - Protein Structure Prediction

Protein:	PPSA_ECOLI
Organism:	Escherichia coli
Length:	792 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPSA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|157156730, gi... - gi\|75190740\|ref\|ZP_00704007.1\| COG0574: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Es...	835.0	[0..1]	[792..1]
gi\|25288780 - pir\|\|E85778 phosphoenolpyruvate synthase [imported] - Escherichia coli (strain O157:H7, substrain E... gi\|15802114, gi\|... - gi\|15802114\|ref\|NP_288136.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 EDL933], gi\|1251...	835.0	[0..1]	[792..1]
gi\|192927060, gi... - gi\|75256660\|ref\|ZP_00728277.1\| COG0574: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Es... gi\|194429505, gi... - gi\|75209254\|ref\|ZP_00709498.1\| COG0574: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Es...	835.0	[0..1]	[792..1]
gi\|26108356, gi\|... - gi\|26247953\|ref\|NP_753993.1\| phosphoenolpyruvate synthase [Escherichia coli CFT073], gi\|26108356\|gb\|...	835.0	[0..1]	[792..1]
gi\|189000363, gi... - gi\|189000363\|gb\|EDU69349.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|187769382, gi... - gi\|187769382\|gb\|EDU33226.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|168800119, gi... - gi\|189377607\|gb\|EDU96023.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. EC508], gi\|1... gi\|168789837, gi... - gi\|189370578\|gb\|EDU88994.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|13361876, gi\|... - gi\|15831663\|ref\|NP_310436.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189356155, gi... - gi\|189356155\|gb\|EDU74574.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|168751886, gi... - gi\|188014126\|gb\|EDU52248.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. EC4113], gi\|... gi\|189360608, gi... - gi\|189360608\|gb\|EDU79027.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|168762236, gi... - gi\|189367438\|gb\|EDU85854.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|209769000, gi... - pir\|\|A90930 phosphoenolpyruvate synthase [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|13361876, gi\|... - gi\|15831663\|ref\|NP_310436.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7], gi\|13361876\|db... gi\|254592719, gi... - gi\|254793319\|ref\|YP_003078156.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. TW14359... gi\|217318393, gi... - gi\|217329046\|ref\|ZP_03445127.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. TW14588]... gi\|208816981, gi... - gi\|208816981\|ref\|ZP_03258101.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. EC4045],... gi\|208724868, gi... - gi\|208810352\|ref\|ZP_03252228.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. EC4206],... gi\|209395961, gi... - gi\|209395961\|ref\|YP_002270771.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. EC4115]... gi\|208818525, gi... - gi\|208818525\|ref\|ZP_03258845.1\| phosphoenolpyruvate synthase [Escherichia coli O157:H7 str. EC4042],...	835.0	[0..1]	[792..1]
gi\|191167830, gi... - gi\|75228987\|ref\|ZP_00715574.1\| COG0574: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Es...	834.0	[0..1]	[792..1]
gi\|110615037, gi... - gi\|110805489\|ref\|YP_689009.1\| phosphoenolpyruvate synthase [Shigella flexneri 5 str. 8401], gi\|11061... gi\|30063031, gi\|... - gi\|30063031\|ref\|NP_837202.1\| phosphoenolpyruvate synthase [Shigella flexneri 2a str. 2457T], gi\|3004... gi\|24051847, gi\|... - gi\|24112901\|ref\|NP_707411.1\| phosphoenolpyruvate synthase [Shigella flexneri 2a str. 301], gi\|240518...	834.0	[0..1]	[792..1]
gi\|91072490, gi\|... - gi\|91210916\|ref\|YP_540902.1\| phosphoenolpyruvate synthase [Escherichia coli UTI89], gi\|91072490\|gb\|A... gi\|237705649, gi... - gi\|237705649\|ref\|ZP_04536130.1\| phosphoenolpyruvate synthase [Escherichia sp. 3_2_53FAA], gi\|2269004... gi\|117623880, gi... - gi\|117623880\|ref\|YP_852793.1\| phosphoenolpyruvate synthase [Escherichia coli APEC O1], gi\|115513004\|... gi\|218558572, gi... - gi\|218558572\|ref\|YP_002391485.1\| phosphoenolpyruvate synthase [Escherichia coli S88], gi\|218365341\|e...	834.0	[0..1]	[792..1]
gi\|194422580, gi... - gi\|83586006\|ref\|ZP_00924644.1\| COG0574: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Es... gi\|253324387, gi... - gi\|254288550\|ref\|YP_003054298.1\| phosphoenolpyruvate synthase [Escherichia coli BL21(DE3)], gi\|25397... gi\|251785153, gi... - gi\|251785153\|ref\|YP_002999457.1\| hypothetical protein B21_01660 [Escherichia coli BL21], gi\|24237742... gi\|253973663, gi... - gi\|254161762\|ref\|YP_003044870.1\| phosphoenolpyruvate synthase [Escherichia coli B str. REL606], gi\|2...	834.0	[0..1]	[792..1]
gi\|110641823, gi... - gi\|110641823\|ref\|YP_669553.1\| phosphoenolpyruvate synthase [Escherichia coli 536], gi\|110343415\|gb\|A... gi\|227837450, gi... - gi\|227885877\|ref\|ZP_04003682.1\| phosphoenolpyruvate synthase [Escherichia coli 83972], gi\|227837450\|... gi\|191171722, gi... - gi\|75241418\|ref\|ZP_00725269.1\| COG0574: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Es...	833.0	[0..1]	[792..1]

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Predicted Domain #1

Region A:
Residues: [1-792]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNGSSPLV LWYNQLGMND VDRVGGKNAS LGEMITNLSG MGVSVPNGFA TTADAFNQFL  60
   61 DQSGVNQRIY ELLDKTDIDD VTQLAKAGAQ IRQWIIDTPF QPELENAIRE AYAQLSADDE 120
  121 NASFAVRSSA TAEDMPDASF AGQQETFLNV QGFDAVLVAV KHVFASLFND RAISYRVHQG 180
  181 YDHRGVALSA GVQRMVRSDL ASSGVMFSID TESGFDQVVF ITSAWGLGEM VVQGAVNPDE 240
  241 FYVHKPTLAA NRPAIVRRTM GSKKIRMVYA PTQEHGKQVK IEDVPQEQRD IFSLTNEEVQ 300
  301 ELAKQAVQIE KHYGRPMDIE WAKDGHTGKL FIVQARPETV RSRGQVMERY TLHSQGKIIA 360
  361 EGRAIGHRIG AGPVKVIHDI SEMNRIEPGD VLVTDMTDPD WEPIMKKASA IVTNRGGRTC 420
  421 HAAIIARELG IPAVVGCGDA TERMKDGENV TVSCAEGDTG YVYAELLEFS VKSSSVETMP 480
  481 DLPLKVMMNV GNPDRAFDFA CLPNEGVGLA RLEFIINRMI GVHPRALLEF DDQEPQLQNE 540
  541 IREMMKGFDS PREFYVGRLT EGIATLGAAF YPKRVIVRLS DFKSNEYANL VGGERYEPDE 600
  601 ENPMLGFRGA GRYVSDSFRD CFALECEAVK RVRNDMGLTN VEIMIPFVRT VDQAKAVVEE 660
  661 LARQGLKRGE NGLKIIMMCE IPSNALLAEQ FLEYFDGFSI GSNDMTQLAL GLDRDSGVVS 720
  721 ELFDERNDAV KALLSMAIRA AKKQGKYVGI CGQGPSDHED FAAWLMEEGI DSLSLNPDTV 780
  781 VQTWLSLAEL KK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2olsA
Description:	No description for 2olsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits