YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29142173, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29142173, gi|....

Description	E-value	Query Range	Subject Range
FLGH_SHIB3 - Flagellar L-ring protein OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=flgH PE=3 SV...	3.0E-86	[1..232]	[1..232]
gi\|205357317, gi... - gi\|205357317\|ref\|ZP_02346782.2\| flagellar L-ring protein FlgH [Salmonella enterica subsp. enterica s... gi\|199602182, gi... - gi\|200389737\|ref\|ZP_03216348.1\| flagellar L-ring protein FlgH [Salmonella enterica subsp. enterica s... gi\|62127330, gi\|... - gi\|62179697\|ref\|YP_216114.1\| flagellar basal body L-ring protein [Salmonella enterica subsp. enteric...	4.0E-86	[1..232]	[4..235]
gi\|24112487, gi\|... - ref\|NP_706997.1\| Flagellar basal body L-ring protein precursor [Shigella flexneri 2a str. 301], gb\|... gi\|91071805, gi\|... - gi\|91210231\|ref\|YP_540217.1\| flagellar basal body L-ring protein [Escherichia coli UTI89], gi\|910718...	4.0E-83	[1..232]	[6..237]
FLGH_ECOLI - Flagellar L-ring protein precursor (Basal body L-ring protein) - Escherichia coli gi\|13360921, gi\|... - gi\|15830711\|ref\|NP_309484.1\| flagellar basal body L-ring protein [Escherichia coli O157:H7 str. Saka... FLGH_SHISS - Flagellar L-ring protein OS=Shigella sonnei (strain Ss046) GN=flgH PE=3 SV=1 gi\|168758628, gi... - gi\|189354588\|gb\|EDU73007.1\| flagellar L-ring protein FlgH [Escherichia coli O157:H7 str. EC4401], gi... gi\|85674831, gi\|... - gi\|89107925\|ref\|AP_001705.1\| flagellar protein of basal-body outer-membrane L ring [Escherichia coli... gi\|188018204, gi... - gi\|188018204\|gb\|EDU56326.1\| flagellar L-ring protein FlgH [Escherichia coli O157:H7 str. EC4113], gi... gi\|193064518, gi... - gi\|75257515\|ref\|ZP_00729018.1\| COG2063: Flagellar basal body L-ring protein [Escherichia coli E22], ... gi\|168767738, gi... - gi\|189363176\|gb\|EDU81595.1\| flagellar L-ring protein FlgH [Escherichia coli O157:H7 str. EC4486], gi... EG20264 - flagellar protein of basal-body outer-membrane L ring / Flagellar synthesis, basal body L-ring lipop... gi\|188490637, gi... - gi\|75513523\|ref\|ZP_00735927.1\| COG2063: Flagellar basal body L-ring protein [Escherichia coli 53638]... gi\|189365530, gi... - gi\|189365530\|gb\|EDU83946.1\| flagellar L-ring protein FlgH [Escherichia coli O157:H7 str. EC4501], gi... gi\|188999115, gi... - gi\|188999115\|gb\|EDU68101.1\| flagellar L-ring protein FlgH [Escherichia coli O157:H7 str. EC4076], gi... gi\|187770494, gi... - gi\|187770494\|gb\|EDU34338.1\| flagellar L-ring protein FlgH [Escherichia coli O157:H7 str. EC4196], gi... FLGH_SHIFL - Flagellar L-ring protein OS=Shigella flexneri GN=flgH PE=3 SV=1 gi\|56479816, gi\|... - gi\|56479816\|ref\|NP_706997.2\| flagellar basal body L-ring protein [Shigella flexneri 2a str. 301], gi... gi\|168802024, gi... - gi\|189375945\|gb\|EDU94361.1\| flagellar L-ring protein FlgH [Escherichia coli O157:H7 str. EC508], gi\|... gi\|189370490, gi... - gi\|189370490\|gb\|EDU88906.1\| flagellar L-ring protein FlgH [Escherichia coli O157:H7 str. EC869], gi\|... FLGH_ECO57 - Flagellar L-ring protein OS=Escherichia coli O157:H7 GN=flgH PE=3 SV=1 gi\|30040861, gi\|... - gi\|30062615\|ref\|NP_836786.1\| flagellar basal body L-ring protein [Shigella flexneri 2a str. 2457T], ... gi\|83586387, gi\|... - gi\|83586387\|ref\|ZP_00925021.1\| COG2063: Flagellar basal body L-ring protein [Escherichia coli 101-1]... gi\|12514620, gi\|... - gi\|15801196\|ref\|NP_287213.1\| flagellar basal body L-ring protein [Escherichia coli O157:H7 EDL933], ... EG20264 - flagellar protein of basal-body outer-membrane L ring / Flagellar synthesis, basal body L-ring lipop... gi\|193069519, gi... - gi\|75235917\|ref\|ZP_00720054.1\| COG2063: Flagellar basal body L-ring protein [Escherichia coli E11001... FLGH_ECOBW - Flagellar L-ring protein OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=flgH PE=3 SV=1 gi\|75240675, gi\|... - gi\|75240675\|ref\|ZP_00724592.1\| COG2063: Flagellar basal body L-ring protein [Escherichia coli F11], ... gi\|242376883, gi... - gi\|251784610\|ref\|YP_002998914.1\| hypothetical protein B21_01083 [Escherichia coli BL21], gi\|24237688... FLGH_ECO24 - Flagellar L-ring protein OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=flgH PE=3 SV=1 gi\|253973086, gi... - gi\|254161185\|ref\|YP_003044293.1\| flagellar L-ring protein precursor H [Escherichia coli B str. REL60... FLGH_ECOHS - Flagellar L-ring protein OS=Escherichia coli O9:H4 (strain HS) GN=flgH PE=3 SV=1 gi\|254287993, gi... - gi\|254287993\|ref\|YP_003053741.1\| flagellar L-ring protein precursor H [Escherichia coli BL21(DE3)], ... FLGH_ECO45 - Flagellar L-ring protein OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=flgH PE=3 SV=1 gi\|254792461, gi... - gi\|254792461\|ref\|YP_003077298.1\| flagellar protein of basal-body outer-membrane L ring [Escherichia ... FLGH_ECO8A - Flagellar L-ring protein OS=Escherichia coli O8 (strain IAI1) GN=flgH PE=3 SV=1 FLGH_ECO55 - Flagellar L-ring protein OS=Escherichia coli (strain 55989 / EAEC) GN=flgH PE=3 SV=1 FLGH_ECO81 - Flagellar L-ring protein OS=Escherichia coli O81 (strain ED1a) GN=flgH PE=3 SV=1 gi\|218431584, gi... - gi\|218704487\|ref\|YP_002412006.1\| flagellar basal body L-ring protein [Escherichia coli UMN026], gi\|2... gi\|195935469 - gi\|195935469\|ref\|ZP_03080851.1\| flagellar basal body L-ring protein [Escherichia coli O157:H7 str. E... FLGH_ECODH - Flagellar L-ring protein OS=Escherichia coli (strain K12 / DH10B) GN=flgH PE=3 SV=1 gi\|208732664, gi... - gi\|208816016\|ref\|ZP_03257195.1\| flagellar L-ring protein FlgH [Escherichia coli O157:H7 str. EC4045]... gi\|208807280, gi... - gi\|208807280\|ref\|ZP_03249617.1\| flagellar L-ring protein FlgH [Escherichia coli O157:H7 str. EC4206]... FLGH_ECO5E - Flagellar L-ring protein OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=flgH PE=3 SV=1 gi\|208822634, gi... - gi\|208822634\|ref\|ZP_03262953.1\| flagellar L-ring protein FlgH [Escherichia coli O157:H7 str. EC4042]... gi\|217328301, gi... - gi\|217328301\|ref\|ZP_03444383.1\| flagellar L-ring protein FlgH [Escherichia coli O157:H7 str. TW14588... FLGH_ECOSE - Flagellar L-ring protein OS=Escherichia coli (strain SE11) GN=flgH PE=3 SV=1	7.0E-83	[1..232]	[1..232]
gi\|26107620, gi\|... - gi\|26247219\|ref\|NP_753259.1\| flagellar basal body L-ring protein [Escherichia coli CFT073], gi\|26107...	7.0E-83	[1..232]	[6..237]
gi\|110805096, gi... - gi\|110805096\|ref\|YP_688616.1\| flagellar basal body L-ring protein [Shigella flexneri 5 str. 8401], g... gi\|110342847, gi... - gi\|110641255\|ref\|YP_668985.1\| flagellar basal body L-ring protein [Escherichia coli 536], gi\|1103428... gi\|237706935, gi... - gi\|237706935\|ref\|ZP_04537416.1\| flagellar basal body L-ring protein [Escherichia sp. 3_2_53FAA], gi\|... gi\|253773897, gi... - gi\|253773897\|ref\|YP_003036728.1\| flagellar L-ring protein [Escherichia coli BL21(DE3)], gi\|253324941... gi\|4062657 - dbj\|BAA35888.1\| Flagellar basal body L-ring protein precursor [Escherichia coli K12] gi\|170020525, gi... - gi\|170020525\|ref\|YP_001725479.1\| flagellar basal body L-ring protein [Escherichia coli ATCC 8739], g... gi\|117623265, gi... - gi\|117623265\|ref\|YP_852178.1\| flagellar basal body L-ring protein [Escherichia coli APEC O1], gi\|115... gi\|124532259, gi... - gi\|124532259\|ref\|ZP_01702178.1\| flagellar L-ring protein [Escherichia coli B], gi\|124498097\|gb\|EAY45...	7.0E-83	[1..232]	[4..235]
gi\|191168479, gi... - gi\|75228347\|ref\|ZP_00714997.1\| COG2063: Flagellar basal body L-ring protein [Escherichia coli B7A], ...	1.0E-82	[1..232]	[1..232]
sp\|B7UP93\|FLGH_ECO27 - Flagellar L-ring protein OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=flgH PE=3 SV=1 FLGH_ECOL6 - Flagellar L-ring protein OS=Escherichia coli O6 GN=flgH PE=3 SV=2 FLGH_ECO27 - Flagellar L-ring protein OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=flgH PE=3 SV=1 FLGH_ECOL6 - Flagellar L-ring protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=flgH PE=3...	1.0E-82	[1..232]	[1..232]
FLGH_SHIDS - Flagellar L-ring protein OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=flgH PE=3 SV=1	5.0E-82	[1..232]	[1..232]
FLGH_SHIBS - Flagellar L-ring protein OS=Shigella boydii serotype 4 (strain Sb227) GN=flgH PE=3 SV=1	1.0E-81	[1..232]	[1..232]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKYALHAYP VMALMVATLT GCAWIPAKPL VQGATTAQPI PGPVPVANGS IFQSAQPINY  60
   61 GYQPLFEDRR PRNIGDTLTI VLQENVSASK SSSANASRDG KTSFGFDTVP RYLQGLFGNS 120
  121 RADMEASGGN SFNGKGGANA SNTFSGTLTV TVDQVLANGN LHVVGEKQIA INQGTEFIRF 180
  181 SGVVNPRTIS GSNSVPSTQV ADARIEYVGN GYINEAQNMG WLQRFFLNLS PM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits