YRC Public Data Repository - Protein Structure Prediction

Protein:	GERD_BACSU
Organism:	Bacillus subtilis subsp. subtilis str. 168
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GERD_BACSU.

Description	E-value	Query Range	Subject Range
gi\|229009657, gi... - gi\|229009657\|ref\|ZP_04166883.1\| Spore germination protein [Bacillus mycoides DSM 2048], gi\|228751679... gi\|228618399, gi... - gi\|229165136\|ref\|ZP_04292931.1\| Spore germination protein [Bacillus cereus AH621], gi\|228618399\|gb\|E... gi\|228652369, gi... - gi\|229131156\|ref\|ZP_04260068.1\| Spore germination protein [Bacillus cereus BDRD-ST196], gi\|228652369... gi\|89153244, gi\|... - gi\|89208835\|ref\|ZP_01187319.1\| spore germination protein [Bacillus weihenstephanensis KBAB4], gi\|891...	240.0	[0..1]	[182..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKAKTLLMS CFLLLSVTAC APKDQAADMD YDQTKKMVVD ILKTDDGKKA IKELLNDDAM  60
   61 NEALVIDQDA IKGTIEKTLT SKKGEEFWKN IFEDTDFAEG FAKTLQTEHE KVIKKLMKDP 120
  121 DYQKMLMSVM QDPGMDKKYS QLAKSQEFRS YLEEVINETL SSPLYKKQFE DELKKAAKDT 180
  181 AKESE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits