YRC Public Data Repository - Protein Structure Prediction

Protein:	DAPA_NEIMB
Organism:	Neisseria meningitidis MC58
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPA_NEIMB.

Description	E-value	Query Range	Subject Range
DAPA_BARBK - 4-hydroxy-tetrahydrodipicolinate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN...	374.0	[0..1]	[291..1]
DAPA_GEOUR - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter uraniireducens (strain Rf4) GN=dapA PE=3 SV=1	371.0	[0..1]	[291..1]
DAPA_GEOMG - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / ...	368.0	[0..1]	[291..1]
DAPA_GEOSL - Dihydrodipicolinate synthase OS=Geobacter sulfurreducens GN=dapA PE=3 SV=1 DAPA_GEOSL - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127...	365.0	[0..1]	[291..1]
gi\|83647587, gi\|... - gi\|83647587\|ref\|YP_436022.1\| dihydrodipicolinate synthase [Hahella chejuensis KCTC 2396], gi\|8363563...	364.0	[0..1]	[291..1]
gi\|91202476 - gi\|91202476\|emb\|CAJ72115.1\| strongly similar to dihydropicolinate synthase (DHDPS) [Candidatus Kuene...	362.0	[0..1]	[291..1]
gi\|241906440, gi... - gi\|241906440\|ref\|ZP_04791022.1\| dihydrodipicolinate synthase [Desulfovibrio vulgaris RCH1], gi\|24188... DAPA_DESVV - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=... DAPA_DESVH - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 295...	361.0	[0..2]	[291..3]
DAP1_BACHD, DAPA... - Dihydrodipicolinate synthase 1 OS=Bacillus halodurans GN=dapA1 PE=3 SV=1, (Q9KC32) Dihydrodipicolina... DAPA1_BACHD - 4-hydroxy-tetrahydrodipicolinate synthase 1 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 ...	361.0	[0..5]	[285..6]
DAPA_METJA - Dihydrodipicolinate synthase OS=Methanocaldococcus jannaschii GN=dapA PE=1 SV=1 DAPA_METJA - 4-hydroxy-tetrahydrodipicolinate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM ...	360.0	[0..1]	[291..1]
DAPA_NEIG1 - 4-hydroxy-tetrahydrodipicolinate synthase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN...	360.0	[0..1]	[291..1]

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Predicted Domain #1

Region A:
Residues: [1-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQGSLVALI TPMNQDGSIH YEQLRDLIDW HIENGTDGIV AVGTTGESAT LSVEEHTAVI  60
   61 EAVVKHVAKR VPVIAGTGAN NTVEAIALSQ AAEKAGADYT LSVVPYYNKP SQEGIYQHFK 120
  121 TIAEATSIPM IIYNVPGRTV VSMTNDTILR LAEIPNIVGV KEASGNIGSN IELINRAPEG 180
  181 FVVLSGDDHT ALPFMLCGGH GVITVAANAA PKLFADMCRA ALQGDIALAR ELNDRLIPIY 240
  241 DTMFCEPSPA APKWAVSALG RCEPHVRLPL VPLTENGQAK VRAALKASGQ L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	2ehhA
Description:	No description for 2ehhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits