YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|93694, gi\|215467
Organism:	Phage 21
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|93694, gi|215467.

Description	E-value	Query Range	Subject Range
gi\|56682768 - gi\|56682768\|gb\|AAW21763.1\| S [Stx1-converting phage phi-O153] gi\|254592217, gi... - gi\|254792817\|ref\|YP_003077654.1\| lysis protein [Escherichia coli O157:H7 str. TW14359], gi\|254592217...	142.0	[0..1]	[71..26]
gi\|9633440, gi\|5... - gi\|9633440\|ref\|NP_050543.1\| lysis protein [Enterobacteria phage VT2-Sakai], gi\|5881636\|dbj\|BAA84327.... gi\|32170987, gi\|... - gi\|32170987\|ref\|NP_859232.1\| lysis protein [Stx1 converting phage], gi\|32128165\|dbj\|BAC77969.1\| lysi...	140.0	[0..1]	[71..26]
gi\|15802642, gi\|... - gi\|15802642\|ref\|NP_288669.1\| putative lysis protein S of prophage CP-933V [Escherichia coli O157:H7 ... gi\|25371799 - pir\|\|D85845 probable lysis protein S of prophage CP-933V Z3340 [imported] - Escherichia coli (strain... gi\|254593381, gi... - gi\|254793981\|ref\|YP_003078818.1\| putative lysis protein S of prophage CP-933V [Escherichia coli O157...	139.0	[0..1]	[71..20]
gi\|26107703, gi\|... - gi\|26247302\|ref\|NP_753342.1\| lambdoid prophage DLP12 lysis protein S [Escherichia coli CFT073], gi\|2...	139.0	[0..1]	[71..36]
gi\|91072084, gi\|... - gi\|91210510\|ref\|YP_540496.1\| lambdoid prophage DLP12 lysis protein S-like protein [Escherichia coli ... gi\|117623489, gi... - gi\|117623489\|ref\|YP_852402.1\| lambdoid prophage DLP12 lysis protein S-like protein [Escherichia coli... gi\|218558209, gi... - gi\|218558209\|ref\|YP_002391122.1\| Lysis protein S homolog from lambdoid prophage [Escherichia coli S8... gi\|226900007, gi... - gi\|237705250\|ref\|ZP_04535731.1\| lambdoid prophage DLP12 lysis protein S [Escherichia sp. 3_2_53FAA],...	138.0	[0..1]	[71..36]
gi\|115512737, gi... - gi\|117623613\|ref\|YP_852526.1\| phage lysis protein [Escherichia coli APEC O1], gi\|115512737\|gb\|ABJ008...	138.0	[0..1]	[71..30]
gi\|83569537 - gi\|83569537\|ref\|ZP_00920989.1\| hypothetical protein Sdys1_01002193 [Shigella dysenteriae 1012]	136.0	[0..1]	[71..11]
gi\|7466619, gi\|1... - gi\|7466619\|pir\|\|G64910 lysis protein S.b1556 - Escherichia coli (strain K-12) cryptic prophage, dbj\|... gi\|1787838, gi\|4... - gi\|49176122\|ref\|NP_416074.3\| Qin prophage [Escherichia coli K12], gb\|AAC74629.1\| lysis protein S hom...	136.0	[0..1]	[71..26]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSMDKISTG IAYGTSAGSA GYWFLQWLDQ VSPSQWAAIG VLGSLVLGFL TYLTNLYFKI  60
   61 REDRRKAARG E

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.356547
Match:	PF04971.3
Description:	No description for PF04971.3 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits