YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|97953, gi\|321...
Organism:	Lactococcus lactis
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|97953, gi|321....

Description	E-value	Query Range	Subject Range
gi\|81429146, gi\|... - gi\|81429146\|ref\|YP_396147.1\| putative cellobiose-specific phosphotransferasesystem, enzyme IIA [Lact...	135.0	[0..1]	[104..1]
gi\|76574895 - gi\|76574895\|gb\|ABA47365.1\| PTS system, lactose-specific IIA component [Lactococcus lactis] gi\|116326611, gi... - gi\|116326611\|ref\|YP_796531.1\| cellobiose-specific PTS system IIA component [Lactococcus lactis subsp...	130.0	[0..1]	[105..1]
gi\|25287978 - pir\|\|H97264 PTS system lactose-specific enzyme IIA [imported] - Clostridium acetobutylicum gi\|15896218, gi\|... - gi\|15896218\|ref\|NP_349567.1\| PTS system lactose-specific enzyme IIA [Clostridium acetobutylicum ATCC...	130.0	[0..1]	[103..1]
gi\|242232464, gi... - gi\|242255981\|ref\|ZP_04800879.1\| phosphotransferase system PTS lactose/cellobiose-specific IIA subuni... gi\|114806629, gi... - gi\|167038933\|ref\|YP_001661918.1\| phosphotransferase system PTS, lactose/cellobiose-specific IIA subu...	130.0	[0..5]	[101..2]
gi\|48869880, gi\|... - gi\|48869880\|ref\|ZP_00322617.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	130.0	[0..2]	[105..3]
gi\|209560067, gi... - gi\|209560067\|ref\|YP_002286539.1\| PTS system, lactose-specific IIA component (EIIA-Lac) (Lactose- per... gi\|94542775, gi\|... - gi\|94989267\|ref\|YP_597368.1\| PTS system, lactose-specific IIA component [Streptococcus pyogenes MGAS... gi\|94995127, gi\|... - gi\|94995127\|ref\|YP_603225.1\| PTS system, lactose-specific IIA component [Streptococcus pyogenes MGAS... gi\|139474414, gi... - gi\|139474414\|ref\|YP_001129130.1\| PTS system, lactose-specific IIA component [Streptococcus pyogenes ... gi\|71911447, gi\|... - gi\|71911447\|ref\|YP_282997.1\| PTS system, lactose-specific IIA component [Streptococcus pyogenes MGAS... gi\|56808782 - gi\|56808782\|ref\|ZP_00366498.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|71803381, gi\|... - gi\|71904286\|ref\|YP_281089.1\| PTS system, lactose-specific IIA component [Streptococcus pyogenes MGAS... gi\|21905403, gi\|... - gi\|21911191\|ref\|NP_665459.1\| PTS system, lactose-specific IIA component [Streptococcus pyogenes MGAS... gi\|28811819, gi\|... - gi\|28896565\|ref\|NP_802915.1\| PTS system, lactose-specific IIA component [Streptococcus pyogenes SSI-... gi\|94544720, gi\|... - gi\|94991212\|ref\|YP_599312.1\| PTS system, lactose-specific IIA component [Streptococcus pyogenes MGAS... gi\|19749076, gi\|... - gi\|19749076\|gb\|AAL98472.1\| putative PTS system, lactose-specific component IIA [Streptococcus pyogen... gi\|94546664, gi\|... - gi\|94993156\|ref\|YP_601255.1\| PTS system, lactose-specific IIA component [Streptococcus pyogenes MGAS... gi\|50914989, gi\|... - gi\|50914989\|ref\|YP_060961.1\| PTS system, lactose-specific IIA component [Streptococcus pyogenes MGAS... gi\|15675727, gi\|... - gi\|15675727\|ref\|NP_269901.1\| PTS system, lactose-specific IIA component [Streptococcus pyogenes M1 G...	130.0	[0..1]	[105..1]
gi\|167529327, gi... - gi\|167635284\|ref\|ZP_02393599.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|167640461, gi... - gi\|167640461\|ref\|ZP_02398724.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|170687995, gi... - gi\|170687995\|ref\|ZP_02879208.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|170127345, gi... - gi\|170707788\|ref\|ZP_02898239.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|51973821, gi\|... - gi\|52140352\|ref\|YP_086477.1\| PTS system, cellobiose-specific IIA component (phosphotransferase enzym... gi\|177652940, gi... - gi\|177652940\|ref\|ZP_02935267.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|190561157, gi... - gi\|190567741\|ref\|ZP_03020653.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis Ts... gi\|196029671, gi... - gi\|196039511\|ref\|ZP_03106816.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus NVH05... gi\|196023464, gi... - gi\|196045633\|ref\|ZP_03112863.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus 03BB1... gi\|218537844, gi... - gi\|218906389\|ref\|YP_002454223.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus AH82... gi\|222098670, gi... - gi\|222098670\|ref\|YP_002532728.1\| PTS system, cellobiose-specific IIA component (phosphotransferase e... gi\|49188048, gi\|... - gi\|49188048\|ref\|YP_031301.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|49481192, gi\|... - gi\|49481192\|ref\|YP_039203.1\| PTS system, cellobiose-specific IIA component (phosphotransferase enzym... gi\|42740301, gi\|... - gi\|42784369\|ref\|NP_981616.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus ATCC 109... gi\|254757097 - gi\|254757097\|ref\|ZP_05209125.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|47530761, gi\|... - gi\|47530761\|ref\|YP_022110.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|254744343 - gi\|254744343\|ref\|ZP_05202023.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|21397675, gi\|... - gi\|65317184\|ref\|ZP_00390143.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|254737016, gi... - gi\|254737016\|ref\|ZP_05194721.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|30259915, gi\|... - gi\|30265238\|ref\|NP_847615.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|254724362 - gi\|254724362\|ref\|ZP_05186146.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|254686364 - gi\|254686364\|ref\|ZP_05150223.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|229604727, gi... - gi\|229604727\|ref\|YP_002869432.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis s... gi\|229187426, gi... - gi\|229187426\|ref\|ZP_04314569.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|228689075, gi... - gi\|229094308\|ref\|ZP_04225383.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|227817972, gi... - gi\|227817972\|ref\|YP_002817981.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis s... gi\|225785885, gi... - gi\|225867179\|ref\|YP_002752557.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus 03BB...	129.0	[0..4]	[104..2]
gi\|147922098, gi... - gi\|148985794\|ref\|ZP_01818922.1\| PTS system, lactose-specific IIA component [Streptococcus pneumoniae... gi\|183576574, gi... - gi\|183576574\|gb\|EDT97102.1\| lactose-specific phosphotransferase enzyme iia component (pts system lac... gi\|183577168, gi... - gi\|183577168\|gb\|EDT97696.1\| lactose-specific phosphotransferase enzyme iia component (pts system lac... gi\|183572551, gi... - gi\|183572551\|gb\|EDT93079.1\| lactose-specific phosphotransferase enzyme iia component (pts system lac... gi\|168491109, gi... - gi\|183574521\|gb\|EDT95049.1\| lactose-specific phosphotransferase enzyme iia component (pts system lac... gi\|116077175, gi... - gi\|116516599\|ref\|YP_816522.1\| PTS system, lactose-specific IIA component [Streptococcus pneumoniae D... gi\|172043544, gi... - gi\|172043544\|gb\|EDT51590.1\| lactose-specific phosphotransferase enzyme iia component (pts system lac... gi\|168486510, gi... - gi\|183570441\|gb\|EDT90969.1\| lactose-specific phosphotransferase enzyme iia component (pts system lac... gi\|25287982 - pir\|\|F98005 PTS system, lactose-specific IIA component (EC 2.7.-.-) [imported] - Streptococcus pneum... gi\|15458693, gi\|... - gi\|15903114\|ref\|NP_358664.1\| PTS system, lactose-specific IIA component [Streptococcus pneumoniae R6... gi\|149026434, gi... - gi\|149026434\|ref\|ZP_01836571.1\| PTS system, lactose-specific IIA component [Streptococcus pneumoniae... gi\|147760391, gi... - gi\|149008152\|ref\|ZP_01831671.1\| PTS system, lactose-specific IIA component [Streptococcus pneumoniae... gi\|149004138, gi... - gi\|149004138\|ref\|ZP_01828941.1\| PTS system, lactose-specific IIA component [Streptococcus pneumoniae... gi\|148999049, gi... - gi\|148999049\|ref\|ZP_01826481.1\| PTS system, lactose-specific IIA component [Streptococcus pneumoniae... gi\|147926867, gi... - gi\|148995099\|ref\|ZP_01824006.1\| PTS system, lactose-specific IIA component [Streptococcus pneumoniae... gi\|148990442, gi... - gi\|148990442\|ref\|ZP_01821600.1\| PTS system, lactose-specific IIA component [Streptococcus pneumoniae... gi\|225724966, gi... - gi\|225856861\|ref\|YP_002738372.1\| lactose-specific phosphotransferase enzyme iia component (pts syste... gi\|225854658, gi... - gi\|225854658\|ref\|YP_002736170.1\| lactose-specific phosphotransferase enzyme iia component (pts syste... gi\|242245443, gi... - gi\|242245443\|ref\|ZP_04799880.1\| PTS system, lactose-specific IIA component [Streptococcus pneumoniae... gi\|237822459 - gi\|237822459\|ref\|ZP_04598304.1\| lactose-specific phosphotransferase enzyme iia component (pts system... gi\|237649550 - gi\|237649550\|ref\|ZP_04523802.1\| lactose-specific phosphotransferase enzyme iia component (pts system... gi\|225726993, gi... - gi\|225860972\|ref\|YP_002742481.1\| lactose-specific phosphotransferase enzyme iia component (pts syste... gi\|194398361, gi... - gi\|194398361\|ref\|YP_002037793.1\| PTS system, IIA component [Streptococcus pneumoniae G54], gi\|194358... gi\|221231894, gi... - gi\|221231894\|ref\|YP_002511046.1\| PTS system, lactose-specific IIA component [Streptococcus pneumonia... gi\|168995239, gi... - gi\|169832737\|ref\|YP_001694627.1\| lactose-specific phosphotransferase enzyme IIA component [Streptoco... gi\|182629414, gi... - gi\|182684080\|ref\|YP_001835827.1\| PTS system, lactose-specific IIA component [Streptococcus pneumonia...	129.0	[0..1]	[105..1]
gi\|116106390, gi... - gi\|62512732\|ref\|ZP_00384342.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|190714067, gi... - gi\|191639765\|ref\|YP_001988931.1\| Cellobiose PTS, EIIA [Lactobacillus casei BL23], gi\|190714067\|emb\|C... gi\|227189601, gi... - gi\|227532767\|ref\|ZP_03962816.1\| PTS family lactose/cellobiose (lac) porter component IIA [Lactobacil...	128.0	[0..2]	[105..3]
gi\|52005585, gi\|... - gi\|52787764\|ref\|YP_093593.1\| LicA [Bacillus licheniformis ATCC 14580], gi\|52350266\|gb\|AAU42900.1\| Li...	128.0	[0..3]	[103..2]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNREEMTLLG FEIVAYAGDA RSKLLEALKA AENGDFAKAD SLVVEAGSCI AEAHSSQTGM  60
   61 LAREASGEEL PYSVTMMHGQ DHLMTTILLK DVIHHLIELY KRGAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.221849
Match:	1e2aA
Description:	Enzyme IIa from lactose specific PTS, IIa-lac
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits