YRC Public Data Repository - Protein Structure Prediction

Protein:	PAIP2_RAT
Organism:	Rattus norvegicus
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAIP2_RAT.

Description	E-value	Query Range	Subject Range
gi\|73981014 - gi\|73981014\|ref\|XP_533009.2\| PREDICTED: similar to Polyadenylate-binding protein-interacting protein...	217.0	[0..1]	[124..388]
gi\|109473800, gi... - gi\|109473800\|ref\|XP_001073206.1\| PREDICTED: similar to Polyadenylate-binding protein-interacting pro...	192.0	[0..1]	[124..68]
gi\|114578053 - gi\|114578053\|ref\|XP_001139063.1\| PREDICTED: similar to KIAA1155 protein [Pan troglodytes]	191.0	[0..1]	[124..146]
gi\|76628973 - gi\|76628973\|ref\|XP_584866.2\| PREDICTED: similar to Polyadenylate-binding protein-interacting protein...	186.0	[0..1]	[124..117]
gi\|50510813 - gi\|50510813\|dbj\|BAD32392.1\| mKIAA1155 protein [Mus musculus]	185.0	[0..1]	[124..40]
gi\|109103355 - gi\|109103355\|ref\|XP_001100423.1\| PREDICTED: similar to Polyadenylate-binding protein-interacting pro...	180.0	[0..1]	[124..40]
PAIP2 - poly(A) binding protein interacting protein 2	175.0	[0..1]	[124..1]

Back

Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDPSRSSTS PSIINDDVII NGHSHEEDNP FAEYMWMENE EEFNRQIEEE LWEEEFIERC  60
   61 FQEMLEEEEE HEWFIPARDL PQTMDQIQDQ FNDLVISDGS SLEDLVVKSN LNPNAKEFVP 120
  121 GVKY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits