YRC Public Data Repository - Protein Structure Prediction

Protein:	RL11_STRVN
Organism:	Streptomyces violaceoruber
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL11_STRVN.

Description	E-value	Query Range	Subject Range
RL11_STRSF - 50S ribosomal protein L11 OS=Streptomyces sp. (strain FRI-5) GN=rplK PE=3 SV=1 gi\|303918, gi\|541505 - pir\|\|S40772 ribosomal protein L11 - Streptomyces sp, gi\|303918\|dbj\|BAA03346.1\| L11 equivalent ribos...	199.0	[0..1]	[144..1]
gi\|25027043, gi\|... - gi\|25027043\|ref\|NP_737097.1\| 50S ribosomal protein L11 [Corynebacterium efficiens YS-314], gi\|234923...	199.0	[0..1]	[144..37]
gi\|109942287 - gi\|109942287\|emb\|CAJ84543.1\| L11 ribosomal protein [Streptomyces clavuligerus] gi\|254391409, gi... - gi\|254391409\|ref\|ZP_05006612.1\| ribosomal protein L11 [Streptomyces clavuligerus ATCC 27064], gi\|197...	197.0	[0..1]	[144..1]
RL11_RHOOB - 50S ribosomal protein L11 OS=Rhodococcus opacus (strain B4) GN=rplK PE=3 SV=1 RL11_RHOJR - 50S ribosomal protein L11 OS=Rhodococcus jostii (strain RHA1) GN=rplK PE=3 SV=1	196.0	[0..1]	[144..1]
RL11_STRAW - 50S ribosomal protein L11 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NB... RL11_STRAW - 50S ribosomal protein L11 OS=Streptomyces avermitilis GN=rplK PE=3 SV=1	196.0	[0..1]	[144..1]
RL11_STRVG - 50S ribosomal protein L11 OS=Streptomyces virginiae GN=rplK PE=3 SV=1	195.0	[0..1]	[144..1]
RL11_COREF - 50S ribosomal protein L11 OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 1... RL11_COREF - 50S ribosomal protein L11 OS=Corynebacterium efficiens GN=rplK PE=3 SV=2	194.0	[0..1]	[144..1]
RL11_ALKEH - 50S ribosomal protein L11 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) G...	194.0	[0..5]	[144..2]
RL11_STRAT - 50S ribosomal protein L11 OS=Streptomyces antibioticus GN=rplK PE=3 SV=1	194.0	[0..1]	[144..1]
RL11_STRLA - 50S ribosomal protein L11 OS=Streptomyces lavendulae GN=rplK PE=3 SV=1	194.0	[0..1]	[144..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKKKKVTG LIKLQIQAGA ANPAPPVGPA LGQHGVNIME FCKAYNAATE SQRGWVIPVE  60
   61 ITVYEDRSFT FITKTPPAAK MILKAAGVEK GSGEPHKTKV AKITRDQVRE IATTKMPDLN 120
  121 ANDLDQAEKI IAGTARSMGV TVEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.154902
Match:	1mmsA
Description:	Ribosomal protein L11, C-terminal domain; Ribosomal protein L11, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.48853326749311	bayes_pls_golite062009
structural molecule activity	8.91295112573357	bayes_pls_golite062009
binding	1.24107701233598	bayes_pls_golite062009
RNA binding	0.569786512924389	bayes_pls_golite062009
protein binding	0.566747114628174	bayes_pls_golite062009
nucleic acid binding	0.504857866150866	bayes_pls_golite062009
translation regulator activity	0.37140962719814	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: