YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|231215, gi\|23...
Organism:	Homo sapiens
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|231215, gi|23....

Description	E-value	Query Range	Subject Range
gi\|114579639 - gi\|114579639\|ref\|XP_001146939.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	224.0	[0..1]	[153..148]
gi\|61371045, gi\|... - gi\|61371045\|gb\|AAX43599.1\| interleukin 1 beta [synthetic construct], gi\|61371042\|gb\|AAX43598.1\| inte...	223.0	[0..1]	[153..117]
HGNC:5992\|MIM:14... - 1, beta IL1B - interleukin 1, beta gi\|123994357, gi... - gi\|61358515\|gb\|AAX41579.1\| interleukin 1 beta [synthetic construct], gi\|60654657\|gb\|AAX31893.1\| inte...	223.0	[0..1]	[153..117]
IL1B_MACMU - Interleukin-1 beta OS=Macaca mulatta GN=IL1B PE=2 SV=1	222.0	[0..1]	[153..117]
IL1B_MACNE - Interleukin-1 beta OS=Macaca nemestrina GN=IL1B PE=2 SV=1	219.0	[0..1]	[153..117]

Back

Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APVRSLNCTL RDSQQKSLVM SGPYELKALH LQGQDMEQQV VFSMSFVQGE ESNDKIPVAL  60
   61 GLKEKNLYLS CVLKDDKPTL QLESVDPKNY PKKKMEKRFV FNKIEINNKL EFESAQFPNW 120
  121 YISTSQAENM PVFLGGTKGG QDITDFTMQF VSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.522879
Match:	1i1bA
Description:	CRYSTAL STRUCTURE OF RECOMBINANT HUMAN INTERLEUKIN-1BETA AT 2.0 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.207885057641751	bayes_pls_golite062009
protein binding	0.11345320970064	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: