YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9941, gi\|7434...
Organism:	Plasmodium falciparum
Length:	1094 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9941, gi|7434....

Description	E-value	Query Range	Subject Range
gi\|23488820 - gi\|23488820\|gb\|EAA21409.1\| DNA polymerase delta catalytic subunit [Plasmodium yoelii yoelii] gi\|83282608 - gi\|83282608\|ref\|XP_729844.1\| DNA polymerase delta catalytic subunit [Plasmodium yoelii yoelii str. 1...	978.0	[0..10]	[1094..9]
DPOD1_RAT - DNA polymerase delta catalytic subunit OS=Rattus norvegicus GN=Pold1 PE=2 SV=1	977.0	[0..28]	[1090..25]
DPOD1_MESAU - DNA polymerase delta catalytic subunit OS=Mesocricetus auratus GN=POLD1 PE=2 SV=1	977.0	[0..15]	[1090..19]
DPOD1_MOUSE - DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1 PE=1 SV=2	971.0	[0..15]	[1090..19]
gi\|157929094, gi... - gi\|157929094\|gb\|ABW03832.1\| polymerase (DNA directed), delta 1, catalytic subunit 125kDa [synthetic ... gi\|14250670 - gi\|14250670\|gb\|AAH08800.1\| Polymerase (DNA directed), delta 1, catalytic subunit 125kDa [Homo sapien...	968.0	[0..15]	[1090..19]

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Predicted Domain #1

Region A:
Residues: [1-982]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEELKTCPFT NVIPYGLLYD KLKKEKNNDV PENYVIEEFD KLLKNYERPN VYDEIGNATF  60
   61 KNDEDLITFQ IDLDYTVENI FKNMIYNESG SNNSILNDIY MPYRILLSKD KNYVSVPIIR 120
  121 IYSLRKDGCS VLINVHNFFP YFYVEKPDDF DNEDLIKLEM LMNENLNLNS QYKIYEKKIL 180
  181 KIEIVKTESL MYFKKNGKKD FLKITVLLPK MVPSLKKYFE GIVHVNNKSI GGIVYEANLP 240
  241 FILRYIIDHK ITGSSWINCK KGHYYIRNKN KKISNCTFEI DISYEHVEPI TLENEYQQIP 300
  301 KLRILSFDIE CIKLDGKGFP EAKNDPIIQI SSILYFQGEP IDNCTKFIFT LLECASIPGS 360
  361 NVIWFNDEKT LLEAWNEFII RIDPDFLTGY NIINFDLPYI LNRGTALNLK KLKFLGRIKN 420
  421 VASTVKDSSF SSKQFGTHET KEINIFGRIQ FDVYDLIKRD YKLKSYTLNY VSFEFLKEQK 480
  481 EDVHYSIMND LQNESPESRK RIATYCIKDG VLPLRLIDKL LFIYNYVEMA RVTGTPFVYL 540
  541 LTRGQQIKVT SQLYRKCKEL NYVIPSTYMK VNTNEKYEGA TVLEPIKGYY IEPISTLDFA 600
  601 SLYPSIMIAH NLCYSTLIKS NHEVSDLQND DITTIQGKNN LKFVKKNVKK GILPLIVEEL 660
  661 IEARKKVKLL IKNEKNNITK MVLNGRQLAL KISANSVYGY TGASSGGQLP CLEVAVSITT 720
  721 LGRSMIEKTK ERVESFYCKS NGYEHNSTVI YGDTDSVMVK FGTNNIEEAM TLGKDAAERI 780
  781 SKEFLSPIKL EFEKVYCPYL LLNKKRYAGL LYTNPNKHDK MDCKGIETVR RDFCILIQQM 840
  841 METVLNKLLI EKNLNSAIEY TKSKIKELLT NNIDMSLLVV TKSLGKTDYE TRLPHVELAK 900
  901 KLKQRDSATA PNVGDRVSYI IVKGVKGQAQ YERAEDPLYV LDNNLAIDYN HYLDAIKSPL 960
  961 SRIFEVIMQN SDSLFSGDHT RH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2gv9A
Description:	No description for 2gv9A was found.

Predicted Domain #2

Region A:
Residues: [983-1094]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTILTSSQTA LSKFLKKSVR CIGCNSSIKK PPLCNHCKEN KEFSIYMQKI KDFKNKQNEF  60
   61 FQLWTECQRC QGNLHVDVIC MNRDCPIFYR RAKIKKDIAN LQEQVTSLRM DW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits