YRC Public Data Repository - Protein Structure Prediction

Protein:	CCMD_HAEIN
Organism:	Haemophilus influenzae Rd KW20
Length:	67 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCMD_HAEIN.

Description	E-value	Query Range	Subject Range
gi\|68544069, gi\|... - gi\|68544069\|ref\|ZP_00583744.1\| Heme exporter protein D (CcmD) [Shewanella baltica OS155], gi\|6851822... gi\|160873354, gi... - gi\|160873354\|ref\|YP_001552670.1\| Heme exporter protein D (CcmD) [Shewanella baltica OS195], gi\|16085...	92.0	[0..1]	[66..1]
gi\|114561364, gi... - gi\|114561364\|ref\|YP_748877.1\| Heme exporter protein D (CcmD) [Shewanella frigidimarina NCIMB 400], g...	91.0	[0..1]	[65..1]
gi\|89073444, gi\|... - gi\|89073444\|ref\|ZP_01159967.1\| heme exporter protein D [Photobacterium sp. SKA34], gi\|89050708\|gb\|EA...	89.0	[0..1]	[67..1]
gi\|2865532 - gi\|2865532\|gb\|AAC02696.1\| cytochrome c maturation protein D [Shewanella putrefaciens] gi\|24371858, gi\|... - gi\|24371858\|ref\|NP_715900.1\| heme exporter protein CcmD [Shewanella oneidensis MR-1], gi\|24345675\|gb... SO0260 - heme exporter protein CcmD	89.0	[0..1]	[66..1]
gi\|90438843, gi\|... - gi\|90579958\|ref\|ZP_01235766.1\| heme exporter protein D [Vibrio angustum S14], gi\|90438843\|gb\|EAS6402...	89.0	[0..1]	[67..1]
gi\|120557110, gi... - gi\|82743881\|ref\|ZP_00906498.1\| heme exporter protein CcmD [Shewanella sp. W3-18-1], gi\|82718758\|gb\|E... gi\|77816517, gi\|... - gi\|77816517\|ref\|ZP_00815699.1\| Heme exporter protein D (CcmD) [Shewanella putrefaciens CN-32], gi\|77... gi\|124510443, gi... - gi\|124545840\|ref\|ZP_01704990.1\| Heme exporter protein D (CcmD) [Shewanella putrefaciens 200], gi\|124...	89.0	[0..1]	[66..1]
gi\|90328265, gi\|... - gi\|90411052\|ref\|ZP_01219066.1\| heme exporter protein D [Photobacterium profundum 3TCK], gi\|90328265\|...	89.0	[0..1]	[67..1]
gi\|52306711, gi\|... - gi\|52424659\|ref\|YP_087796.1\| CcmD protein [Mannheimia succiniciproducens MBEL55E], gi\|52306711\|gb\|AA...	89.0	[0..1]	[67..1]
gi\|78691168, gi\|... - gi\|78691168\|ref\|ZP_00855796.1\| heme exporter protein CcmD [Shewanella sp. MR-7], gi\|78509442\|gb\|EAP2... gi\|117918686, gi... - gi\|78688196\|ref\|ZP_00852912.1\| heme exporter protein CcmD [Shewanella sp. ANA-3], gi\|78504066\|gb\|EAP... gi\|113883257, gi... - gi\|82498599\|ref\|ZP_00884082.1\| heme exporter protein CcmD [Shewanella sp. MR-4], gi\|82403404\|gb\|EAP4...	89.0	[0..1]	[66..1]
gi\|148828254, gi... - gi\|148828254\|ref\|YP_001293007.1\| heme exporter protein D [Haemophilus influenzae PittGG], gi\|1487194... gi\|148716454, gi... - gi\|148826294\|ref\|YP_001291047.1\| heme exporter protein D [Haemophilus influenzae PittEE], gi\|1487164... gi\|68057848, gi\|... - gi\|68249649\|ref\|YP_248761.1\| heme exporter protein D [Haemophilus influenzae 86-028NP], gi\|68057848\|... gi\|145638094, gi... - gi\|145638094\|ref\|ZP_01793704.1\| heme exporter protein D [Haemophilus influenzae PittII], gi\|14527242... gi\|145634250, gi... - gi\|145634250\|ref\|ZP_01789961.1\| heme exporter protein D [Haemophilus influenzae PittAA], gi\|14526869... gi\|144979718, gi... - gi\|145627943\|ref\|ZP_01783744.1\| heme exporter protein D [Haemophilus influenzae 22.1-21], gi\|1449797... gi\|229811128, gi... - gi\|229846124\|ref\|ZP_04466236.1\| heme exporter protein D [Haemophilus influenzae 7P49H1], gi\|22981112...	89.0	[0..1]	[67..1]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFQTWSDFF NMGGYGFYVW LSYAVSLVAV IALIVQSVKQ RKTVLQNVLR EKQREERLQQ  60
   61 ANKGNTL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits