YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|541312, gi\|154499
Organism:	Synechococcus sp.
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|541312, gi|154499.

Description	E-value	Query Range	Subject Range
gi\|75704392, gi\|... - gi\|75910667\|ref\|YP_324963.1\| ethanolamine utilization protein EutN/carboxysome structural protein Cc... gi\|25324237 - pir\|\|AH1914 carbon dioxide concentrating mechanism protein [imported] - Nostoc sp. (strain PCC 7120) gi\|17228361, gi\|... - gi\|17228361\|ref\|NP_484909.1\| carbon dioxide concentrating mechanism protein [Nostoc sp. PCC 7120], g...	141.0	[0..1]	[98..1]
gi\|86557795, gi\|... - gi\|86609253\|ref\|YP_478015.1\| carbon dioxide concentrating mechanism protein CcmL [Synechococcus sp. ... gi\|86609253 - gi\|86609253\|ref\|YP_478015.1\| carbon dioxide concentrating mechanism protein CcmL [Cyanobacteria bact...	140.0	[0..1]	[98..1]
gi\|35212661, gi\|... - gi\|37521663\|ref\|NP_925040.1\| carbon dioxide concentrating mechanism protein [Gloeobacter violaceus P...	138.0	[0..1]	[98..1]
gi\|48890856, gi\|... - gi\|71673874\|ref\|ZP_00671622.1\| Ethanolamine utilization protein EutN/carboxysome structural protein ...	137.0	[0..1]	[98..1]
gi\|169886076, gi... - gi\|2331051\|gb\|AAB66836.1\| carbon dioxide concentrating mechanism protein [Synechococcus sp. PCC 7002...	136.0	[0..1]	[97..1]
gi\|86606274 - gi\|86606274\|ref\|YP_475037.1\| carbon dioxide concentrating mechanism protein CcmL [Cyanobacteria bact... gi\|86606274, gi\|... - gi\|86606274\|ref\|YP_475037.1\| carbon dioxide concentrating mechanism protein CcmL [Synechococcus sp. ...	136.0	[0..1]	[98..1]
gi\|23128654, gi\|... - gi\|23128654\|ref\|ZP_00110494.1\| COG4576: Carbon dioxide concentrating mechanism/carboxysome shell pro...	135.0	[0..1]	[98..1]
gi\|67856895, gi\|... - gi\|67920778\|ref\|ZP_00514297.1\| Ethanolamine utilization protein EutN/carboxysome structural protein ...	135.0	[0..1]	[98..1]
gi\|22298488, gi\|... - gi\|22298488\|ref\|NP_681735.1\| carbon dioxide concentrating mechanism protein [Thermosynechococcus elo...	132.0	[0..1]	[98..1]
CCML_SYNY3 - Carbon dioxide concentrating mechanism protein CcmL OS=Synechocystis sp. (strain ATCC 27184 / PCC 68... CCML_SYNY3 - Carbon dioxide concentrating mechanism protein CcmL OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ... gi\|7449624 - pir\|\|S74622 carbon dioxide concentrating mechanism protein ccmL - Synechocystis sp. (strain PCC 6803...	129.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIAKVRGTV VSTYKEPSLQ GVKFLVVQFL DEAGQALQEY EVAADMVGAG VDEWVLISRG  60
   61 SQARHVRDCQ ERPVDAAVIA IIDTVNVENR SVYDKREHS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	2hd3A
Description:	No description for 2hd3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits