YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|154498, gi\|541311
Organism:	Synechococcus sp.
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|154498, gi|541311.

Description	E-value	Query Range	Subject Range
CCMK_SYNP2 - Carbon dioxide concentrating mechanism protein ccmK - Synechococcus sp. (strain PCC 7002) (Agmenellu...	148.0	[0..1]	[101..1]
CCMK2_SYNY3 - Carbon dioxide-concentrating mechanism protein CcmK homolog 2 OS=Synechocystis sp. (strain ATCC 2718... CCMK2_SYNY3 - Carbon dioxide-concentrating mechanism protein CcmK homolog 2 OS=Synechocystis sp. (strain PCC 6803 ... gi\|7469273 - pir\|\|S74624 carbon dioxide concentrating mechanism protein ccmK-3 - Synechocystis sp. (strain PCC 68...	147.0	[0..1]	[101..1]
gi\|35212663, gi\|... - gi\|37521665\|ref\|NP_925042.1\| carbon dioxide concentrating mechanism protein CcmK-like protein [Gloeo...	146.0	[0..1]	[101..1]
gi\|22294670, gi\|... - gi\|22298490\|ref\|NP_681737.1\| carbon dioxide concentrating mechanism protein [Thermosynechococcus elo...	145.0	[0..1]	[101..1]
gi\|67920776, gi\|... - gi\|67920776\|ref\|ZP_00514295.1\| microcompartments protein [Crocosphaera watsonii WH 8501], gi\|6785689...	145.0	[0..1]	[101..1]
gi\|86557797, gi\|... - gi\|86609255\|ref\|YP_478017.1\| carbon dioxide concentrating mechanism protein CcmK [Synechococcus sp. ... gi\|86554814, gi\|... - gi\|86606272\|ref\|YP_475035.1\| carbon dioxide concentrating mechanism protein CcmK [Synechococcus sp. ... gi\|86606272 - gi\|86606272\|ref\|YP_475035.1\| carbon dioxide concentrating mechanism protein CcmK [Cyanobacteria bact... gi\|86609255 - gi\|86609255\|ref\|YP_478017.1\| carbon dioxide concentrating mechanism protein CcmK [Cyanobacteria bact...	145.0	[0..1]	[101..1]
gi\|113477306, gi... - gi\|71673872\|ref\|ZP_00671620.1\| microcompartments protein [Trichodesmium erythraeum IMS101], gi\|71673...	144.0	[0..1]	[101..1]
gi\|23128653, gi\|... - gi\|23128653\|ref\|ZP_00110493.1\| COG4577: Carbon dioxide concentrating mechanism/carboxysome shell pro... gi\|25347179 - pir\|\|AI1914 carbon dioxide concentrating mechanism protein [imported] - Nostoc sp. (strain PCC 7120) gi\|17228362, gi\|... - gi\|17228362\|ref\|NP_484910.1\| carbon dioxide concentrating mechanism protein [Nostoc sp. PCC 7120], g... gi\|75704393, gi\|... - gi\|75910668\|ref\|YP_324964.1\| microcompartments protein [Anabaena variabilis ATCC 29413], gi\|75704393...	144.0	[0..1]	[101..1]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIAVGMIET LGFPAVVEAA DAMVKAARVT LVGYEKIGSG RVTVIVRGDV SEVQASVSAG  60
   61 LDSAKRVAGG EVLSHHIIAR PHENLEYVLP IRYTEAVEQF RM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.045757
Match:	2a1bA
Description:	Carboxysome shell protein ccmK2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits