YRC Public Data Repository - Protein Structure Prediction

Protein:	KPRS_SALTY
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Length:	315 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KPRS_SALTY.

Description	E-value	Query Range	Subject Range
gi\|77359997, gi\|... - gi\|77359997\|ref\|YP_339572.1\| ribose-phosphate pyrophosphokinase [Pseudoalteromonas haloplanktis TAC1...	0.0	[1..315]	[1..315]
gi\|59711371, gi\|... - gi\|59711371\|ref\|YP_204147.1\| ribose-phosphate pyrophosphokinase [Vibrio fischeri ES114], gi\|59479472... gi\|197335710, gi... - gi\|197335710\|ref\|YP_002155525.1\| ribose-Phosphate pyrophosphokinase [Vibrio fischeri MJ11], gi\|19731...	1.0E-99	[2..315]	[19..332]
gi\|54309998, gi\|... - gi\|54309998\|ref\|YP_131018.1\| ribose-phosphate pyrophosphokinase [Photobacterium profundum SS9], gi\|4...	2.0E-99	[1..315]	[1..315]
KPRS_VIBPA - Ribose-phosphate pyrophosphokinase OS=Vibrio parahaemolyticus GN=prs PE=3 SV=1 KPRS_VIBPA - Ribose-phosphate pyrophosphokinase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) G...	6.0E-99	[1..314]	[1..314]
gi\|90437077, gi\|... - gi\|90581723\|ref\|ZP_01237510.1\| ribose-phosphate pyrophosphokinase [Vibrio angustum S14], gi\|90437077... gi\|89051040, gi\|... - gi\|89073087\|ref\|ZP_01159626.1\| ribose-phosphate pyrophosphokinase [Photobacterium sp. SKA34], gi\|890...	6.0E-99	[1..315]	[1..315]
gi\|56460037, gi\|... - gi\|56460037\|ref\|YP_155318.1\| ribose-phosphate pyrophosphokinase [Idiomarina loihiensis L2TR], gi\|561...	7.0E-99	[4..315]	[1..312]
gi\|85692927, gi\|... - gi\|85713258\|ref\|ZP_01044283.1\| ribose-phosphate pyrophosphokinase [Idiomarina baltica OS145], gi\|856...	8.0E-99	[4..315]	[1..312]
KPRS_VIBVU - Ribose-phosphate pyrophosphokinase OS=Vibrio vulnificus GN=prs PE=3 SV=2 KPRS_VIBVY - Ribose-phosphate pyrophosphokinase OS=Vibrio vulnificus (strain YJ016) GN=prs PE=3 SV=1 KPRS_VIBVU - Ribose-phosphate pyrophosphokinase OS=Vibrio vulnificus (strain CMCP6) GN=prs PE=3 SV=2	8.0E-99	[1..314]	[1..314]
gi\|85059858, gi\|... - gi\|85059858\|ref\|YP_455560.1\| ribose-phosphate pyrophosphokinase [Sodalis glossinidius str. 'morsitan...	1.0E-98	[1..315]	[1..315]
gi\|90326145, gi\|... - gi\|90412786\|ref\|ZP_01220786.1\| ribose-phosphate pyrophosphokinase [Photobacterium profundum 3TCK], g...	1.0E-98	[1..315]	[1..315]

Back

Predicted Domain #1

Region A:
Residues: [1-315]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDMKLFAGN ATPELAQRIA NRLYTSLGDA AVGRFSDGEV SVQINENVRG GDIFIIQSTC  60
   61 APTNDNLMEL VVMVDALRRA SAGRITAVIP YFGYARQDRR VRSARVPITA KVVADFLSSV 120
  121 GVDRVLTVDL HAEQIQGFFD VPVDNVFGSP ILLEDMLQLN LDNPIVVSPD IGGVVRARAI 180
  181 AKLLNDTDMA IIDKRRPRAN VSQVMHIIGD VAGRDCVLVD DMIDTGGTLC KAAEALKERG 240
  241 AKRVFAYATH PIFSGNAANN LRNSVIDEVV VCDTIPLTDE IKALPNVRTL TLSGMLAEAI 300
  301 RRISNEESIS AMFEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.69897
Match:	2h06A
Description:	No description for 2h06A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits