YRC Public Data Repository - Protein Structure Prediction

Protein:	RL32_RHOCA
Organism:	Rhodobacter capsulatus
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL32_RHOCA.

Description	E-value	Query Range	Subject Range
gi\|84500956, gi\|... - gi\|84500956\|ref\|ZP_00999191.1\| ribosomal protein L32 [Oceanicola batsensis HTCC2597], gi\|84391023\|gb...	101.0	[0..1]	[68..1]
RL32_PARDP - 50S ribosomal protein L32 OS=Paracoccus denitrificans (strain Pd 1222) GN=rpmF PE=3 SV=1	101.0	[0..1]	[68..1]
gi\|89044770, gi\|... - gi\|89069690\|ref\|ZP_01157027.1\| ribosomal protein L32 [Oceanicola granulosus HTCC2516], gi\|89044770\|g...	101.0	[0..1]	[68..1]
RL32_JANSC - 50S ribosomal protein L32 OS=Jannaschia sp. (strain CCS1) GN=rpmF PE=3 SV=1	101.0	[0..1]	[68..1]
RL32_RHOS5 - 50S ribosomal protein L32 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpmF PE=3 SV...	100.0	[0..1]	[68..1]
RL32_RHOS1 - 50S ribosomal protein L32 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpmF PE=3 SV... RL32_RHOS4 - 50S ribosomal protein L32 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 15...	100.0	[0..1]	[68..1]
gi\|114544451, gi... - gi\|114762841\|ref\|ZP_01442273.1\| ribosomal protein L32 [Roseovarius sp. HTCC2601], gi\|114544451\|gb\|EA...	100.0	[0..1]	[68..1]
RL32_RUEST - 50S ribosomal protein L32 OS=Ruegeria sp. (strain TM1040) GN=rpmF PE=3 SV=1	100.0	[0..1]	[68..1]
RL32_SILPO - 50S ribosomal protein L32 OS=Silicibacter pomeroyi GN=rpmF PE=3 SV=1 RL32_RUEPO - 50S ribosomal protein L32 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rpmF PE=3...	99.0	[0..1]	[68..1]
gi\|84664440, gi\|... - gi\|84687531\|ref\|ZP_01015407.1\| possible 50S ribosomal protein L32 [Rhodobacterales bacterium HTCC265...	98.0	[0..1]	[68..1]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVPQNRVTR SRRNMRRAHD ALVAANPASC PNCGELKRPH HVCGACGHYD DREVVAQAAE  60
   61 VDLDDDAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	1j5aM
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits