YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11513608
Organism:	Bos taurus
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11513608.

Description	E-value	Query Range	Subject Range
gi\|60831506 - gi\|60831506\|gb\|AAX36973.1\| carbonic anhydrase II [synthetic construct]	0.0	[1..260]	[1..260]
gi\|60593530, gi\|... - gi\|60593530\|pdb\|1THK\|A Chain A, Effect Of Shuttle Location And Ph Environment On H+ Transfer In Huma...	0.0	[1..260]	[1..260]
gi\|109086851 - gi\|109086851\|ref\|XP_001096360.1\| PREDICTED: carbonic anhydrase II [Macaca mulatta]	0.0	[1..260]	[1..260]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHHWGYGKH NGPEHWHKDF PIAKGERQSP VDIDTHTAKY DPSLKPLSVS YDQATSLRIL  60
   61 NNGHAFNVEF DDSQDKAVLK GGPLDGTYRL IQFHFHWGSL DGQGSEHTVD KKKYAAELHL 120
  121 VHWNTKYGDF GKAVQQPDGL AVLGIFLKVG SAKPGLQKVV DVLDSIKTKG KSADFTNFDP 180
  181 RGLLPESLDY WTYPGSLTTP PLLECVTWIV LKEPISVSSE QVLKFRKLNF NGEGEPEELM 240
  241 VDNWRPAQPL KNRQIKASFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	113.0
Match:	2nwyA
Description:	No description for 2nwyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits