YRC Public Data Repository - Protein Structure Prediction

Protein:	PYRI_ECOLI
Organism:	Escherichia coli
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PYRI_ECOLI.

Description	E-value	Query Range	Subject Range
PYRI_SHIDS - Aspartate carbamoyltransferase regulatory chain OS=Shigella dysenteriae serotype 1 (strain Sd197) GN...	254.0	[0..1]	[153..1]
gi\|56480557, gi\|... - gi\|56480557\|ref\|NP_709957.2\| aspartate carbamoyltransferase regulatory subunit [Shigella flexneri 2a... PYRI_SHIFL - Aspartate carbamoyltransferase regulatory chain OS=Shigella flexneri GN=pyrI PE=3 SV=4 gi\|30043733, gi\|... - gi\|30065469\|ref\|NP_839640.1\| aspartate carbamoyltransferase regulatory subunit [Shigella flexneri 2a... PYRI_SHIF8 - Aspartate carbamoyltransferase regulatory chain OS=Shigella flexneri serotype 5b (strain 8401) GN=py...	253.0	[0..1]	[153..1]
gi\|83569383, gi\|... - gi\|83569383\|ref\|ZP_00920837.1\| COG1781: Aspartate carbamoyltransferase, regulatory subunit [Shigella... PYRI_ECO7I - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=...	252.0	[0..1]	[153..1]
gi\|229665, gi\|57... - gi\|809199\|pdb\|1AT1\|D Chain D, Crystal Structures Of Phosphonoacetamide Ligated T And Phosphonoacetam...	251.0	[0..1]	[153..1]
PYRI_SALTI - Aspartate carbamoyltransferase regulatory chain OS=Salmonella typhi GN=pyrI PE=3 SV=3 PYRI_SALTI - Aspartate carbamoyltransferase regulatory chain OS=Salmonella typhi GN=pyrI PE=3 SV=3 gi\|16763260 - gi\|16763260\|ref\|NP_458877.1\| aspartate carbamoyltransferase regulatory subunit [Salmonella enterica ... gi\|29144739, gi\|... - gi\|29144739\|ref\|NP_808081.1\| aspartate carbamoyltransferase regulatory subunit [Salmonella enterica ... gi\|214000028 - gi\|214000028\|ref\|ZP_03410763.1\| aspartate carbamoyltransferase regulatory subunit [Salmonella enteri... gi\|213419994 - gi\|213419994\|ref\|ZP_03353060.1\| aspartate carbamoyltransferase regulatory subunit [Salmonella enteri... gi\|213161822 - gi\|213161822\|ref\|ZP_03347532.1\| aspartate carbamoyltransferase regulatory subunit [Salmonella enteri... PYRI_SALSV - Aspartate carbamoyltransferase regulatory chain OS=Salmonella schwarzengrund (strain CVM19633) GN=py... gi\|197291970, gi... - gi\|197291970\|gb\|EDY31320.1\| aspartate carbamoyltransferase, regulatory subunit [Salmonella enterica ... gi\|213855602 - gi\|213855602\|ref\|ZP_03383842.1\| aspartate carbamoyltransferase regulatory subunit [Salmonella enteri... gi\|213646808 - gi\|213646808\|ref\|ZP_03376861.1\| aspartate carbamoyltransferase regulatory subunit [Salmonella enteri... gi\|213585764 - gi\|213585764\|ref\|ZP_03367590.1\| aspartate carbamoyltransferase regulatory subunit [Salmonella enteri... gi\|213427654 - gi\|213427654\|ref\|ZP_03360404.1\| aspartate carbamoyltransferase regulatory subunit [Salmonella enteri...	251.0	[0..1]	[153..1]
gi\|168821120, gi... - gi\|205342274\|gb\|EDZ29038.1\| aspartate carbamoyltransferase, regulatory subunit [Salmonella enterica ... PYRI_SALPB - Aspartate carbamoyltransferase regulatory chain OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... PYRI_SALNS - Aspartate carbamoyltransferase regulatory chain OS=Salmonella newport (strain SL254) GN=pyrI PE=3 SV... PYRI_SALCH - Aspartate carbamoyltransferase regulatory chain OS=Salmonella choleraesuis GN=pyrI PE=3 SV=1 PYRI_SALHS - Aspartate carbamoyltransferase regulatory chain OS=Salmonella heidelberg (strain SL476) GN=pyrI PE=3... PYRI_SALTY - Aspartate carbamoyltransferase regulatory chain OS=Salmonella typhimurium (strain LT2 / SGSC1412 / A... PYRI_SALA4 - Aspartate carbamoyltransferase regulatory chain OS=Salmonella agona (strain SL483) GN=pyrI PE=3 SV=1 PYRI_SALTY - Aspartate carbamoyltransferase regulatory chain OS=Salmonella typhimurium GN=pyrI PE=3 SV=3 PYRI_SALCH - Aspartate carbamoyltransferase regulatory chain OS=Salmonella choleraesuis (strain SC-B67) GN=pyrI P... gi\|205323918, gi... - gi\|205323918\|gb\|EDZ11757.1\| aspartate carbamoyltransferase, regulatory subunit [Salmonella enterica ... gi\|205330375, gi... - gi\|205330375\|gb\|EDZ17139.1\| aspartate carbamoyltransferase, regulatory subunit [Salmonella enterica ... gi\|205336982, gi... - gi\|205336982\|gb\|EDZ23746.1\| aspartate carbamoyltransferase, regulatory subunit [Salmonella enterica ... gi\|168464665, gi... - gi\|195632611\|gb\|EDX51065.1\| aspartate carbamoyltransferase, regulatory subunit [Salmonella enterica ... PYRI_SALPB - Aspartate carbamoyltransferase regulatory chain OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... lcl\|NC_016856.1_... - [gene=pyrI] [protein=aspartate carbamoyltransferase regulatory subunit] [protein_id=YP_005240781.1] ... PYRI_SALTY - Aspartate carbamoyltransferase regulatory chain OS=Salmonella typhimurium GN=pyrI PE=3 SV=3 PYRI_SALCH - Aspartate carbamoyltransferase regulatory chain OS=Salmonella choleraesuis GN=pyrI PE=3 SV=1 gi\|197263000, gi... - gi\|197263000\|ref\|ZP_03163074.1\| aspartate carbamoyltransferase, regulatory subunit [Salmonella enter... PYRI_SALG2 - Aspartate carbamoyltransferase regulatory chain OS=Salmonella gallinarum (strain 287/91 / NCTC 13346... PYRI_SALEP - Aspartate carbamoyltransferase regulatory chain OS=Salmonella enteritidis PT4 (strain P125109) GN=py... PYRI_SALPC - Aspartate carbamoyltransferase regulatory chain OS=Salmonella paratyphi C (strain RKS4594) GN=pyrI P...	249.0	[0..1]	[153..1]
PYRI_SALPA - Aspartate carbamoyltransferase regulatory chain OS=Salmonella paratyphi A GN=pyrI PE=3 SV=1 PYRI_SALPA - Aspartate carbamoyltransferase regulatory chain OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42... PYRI_SALPK - Aspartate carbamoyltransferase regulatory chain OS=Salmonella paratyphi A (strain AKU_12601) GN=pyrI...	248.0	[0..1]	[153..1]
gi\|6013453 - gi\|6013453\|gb\|AAF01339.1\|AF190426_3 aspartate transcarbamylase regulatory subunit [Pantoea agglomera...	247.0	[0..1]	[153..1]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHDNKLQVE AIKRGTVIDH IPAQIGFKLL SLFKLTETDQ RITIGLNLPS GEMGRKDLIK  60
   61 IENTFLSEDQ VDQLALYAPQ ATVNRIDNYE VVGKSRPSLP ERIDNVLVCP NSNCISHAEP 120
  121 VSSSFAVRKR ANDIALKCKY CEKEFSHNVV LAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.0
Match:	1d09B
Description:	Aspartate carbamoyltransferase; Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
aspartate carbamoyltransferase activity	1.31217076713969	bayes_pls_golite062009
binding	0.616301266767101	bayes_pls_golite062009
carboxyl- or carbamoyltransferase activity	0.557470758521584	bayes_pls_golite062009
catalytic activity	0.364912245438605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: